Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0430
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 146 TRNLTIMIWRAVVCYA 193
           TR LTI IW+ +V ++
Sbjct: 282 TRELTIQIWQQIVKFS 297


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 332 ESPPANNNTAAKKPVPKAENPQPSVDLSFFQS 427
           +S  A  +T+   P   + +P PS   SFF S
Sbjct: 71  DSAAAITSTSPSYPGGGSSSPSPSSPSSFFSS 102


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 458  VIEHEIENR*SWNQ 499
            V+EH+ +N+  WNQ
Sbjct: 1495 VVEHKKKNQQEWNQ 1508


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 368 KPVPKAENPQPSVDLSFFQSPP 433
           KP+P  +NP+ + +L +  + P
Sbjct: 307 KPLPMVDNPESTGNLVYIYNNP 328


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 666 TEGTGLADTHLSPET 622
           T G+G  DT +SP+T
Sbjct: 334 TPGSGDGDTEISPQT 348


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 231  NNQNAAQISKMPR 269
            N++ AAQ+SK+PR
Sbjct: 1255 NSRGAAQMSKVPR 1267


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 238 KMQLRFRKCPAQHCSSLLAHQCRFQH*NNSERVATCQQQY 357
           + Q  FR  P+Q  +S   +     H   S R ++C+Q Y
Sbjct: 416 RYQPAFRCKPSQRFASGRYYSAYSLHHVRSSRESSCEQTY 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,633
Number of Sequences: 438
Number of extensions: 4515
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)