Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0429
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    28   1.6  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    27   2.7  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    26   4.8  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   8.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   8.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.4  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 125 SYNADADIGMLVTGTFVGYLIIFAGAAAGYIM 220
           SYN + ++ +     F+G+L++  G   GY +
Sbjct: 17  SYNENTNLSLKTIDAFLGFLVVVGGLQFGYAL 48


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 193 RWCGRGLHNADSFTQTDRHLLSLVGVALFVASGAIIIDRFQHYGKSEIKD 342
           R+  R LH+   F Q  RHL+      LF+        R  H G   I+D
Sbjct: 88  RFVTRSLHDVGDFEQCKRHLVE--NGKLFIQRARACRQRIAHLGYPLIRD 135


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 110 ALHYHSYNADADIGMLVTGTFVGYLII--FAGAAAGYIM 220
           A  Y S+   A I ML+  +F GY I+  F GA  G+ +
Sbjct: 116 AAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFL 154


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 508 NPNKTALYLYAAFEILF*LCSSILCT*FSL 419
           NPNK ++Y+Y  F     LCS  L    SL
Sbjct: 73  NPNKFSIYIYIYFFFYSFLCSPYLFKYISL 102


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 658 LLALVLPIKRQFSYHLHTKKKKQLLNKHNMYRNIEVTV 545
           LLA V+ +K  ++  L  K+ K+LL K    +++EV +
Sbjct: 209 LLAGVVFLKETYAPVLKRKQAKKLLEKQENQKSVEVKI 246


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +3

Query: 39  SESWPSAGCLSSSFWSWHLRVRAWLSTTTVTMQMRISACSSPVPLSGTSSYSLVRPRAT 215
           S S  S+   SSS +   +    ++ST TVT     S+ SS VP S T++ +L   +A+
Sbjct: 226 SSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVP-SSTAALALNASKAS 283


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 688  LNGNQRFFWCLLALVLPIKRQFSYHLHTKKKKQLLNK 578
            LNGNQ+F    + ++  ++ +   HL   KK+ + +K
Sbjct: 1359 LNGNQKFCLSCVDMLKNLEHELIKHLKHMKKESVYSK 1395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,711
Number of Sequences: 5004
Number of extensions: 62342
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)