Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0429
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)               30   1.7  
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               30   1.7  
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20)          29   3.9  
SB_31542| Best HMM Match : FeS (HMM E-Value=1.6)                       29   3.9  
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)                      29   5.1  
SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)                    29   5.1  
SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_30349| Best HMM Match : ABC-3 (HMM E-Value=1.1)                     28   6.7  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         28   6.7  

>SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)
          Length = 478

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 190 YDEVPDKGTGDEHADIRICIVTVVVESHARTRKCQLQKLDDRQPADGHDSLLNLNFII 17
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+ ++
Sbjct: 49  YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHML 106


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 190 YDEVPDKGTGDEHADIRICIVTVVVESHARTRKCQLQKLDDRQPADGHDSLLNLNFII 17
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+ ++
Sbjct: 609 YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHML 666


>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +2

Query: 266  VLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWPXXXXXXXXXXXXXRNEEAKLRTQNR 445
            VL C S+ V  LL+ S ++V +     +W R   P             RN++ ++    R
Sbjct: 978  VLSCFSVVVAFLLSPSRVLVLSCFSQASWTRRPSPRGRLHSPIQARPNRNDQERIYRHAR 1037

Query: 446  AAQSE 460
              Q +
Sbjct: 1038 VCQGD 1042


>SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20)
          Length = 767

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 254 FRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWP 370
           F+W+ L C S  +  +LT+S + V A   T  WLR + P
Sbjct: 234 FKWATLSCRSKFILKVLTESFVNVPA---TMEWLRSKKP 269


>SB_31542| Best HMM Match : FeS (HMM E-Value=1.6)
          Length = 553

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 592 QLLNKHNMYRNIEVTVIAVEFRLLGGP*NPNKTALYLYAAFEILF 458
           QLL KHN   N  +T+I V  +      + NKT   L  AF+ +F
Sbjct: 198 QLLKKHNSNFNYTLTIIDVLSKFAWAVPHKNKTGNELVMAFKRIF 242


>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1189

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 117 TTTVTMQMRISACSSPVPLSGTSSYSLVRPRAT*CRLLHTNGSTSSFAGRCCL 275
           T  VT    I+ C+  VP     +  +  P  T  R+LH    + S AGR C+
Sbjct: 644 TDLVTGNTNITKCTETVPPGAPQNLRVTLPLKTE-RILHVQWQSPSNAGRVCV 695


>SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 254 FRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWP 370
           F+W+ L C S  +  +LT+S + V A   T  WLR + P
Sbjct: 234 FKWATLSCRSKFILKVLTESFVNVPA---TMEWLRSKKP 269


>SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)
          Length = 496

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 9   AIIIIKFKFRSESWPSAGCLSSSFWSWHLRVRAWLSTTTVTMQMRISA 152
           A+++I     S S  +   LS S W W +    WLS   +  ++ I A
Sbjct: 127 AVVVINHMGTSHS-TALNALSKSIWLWAIERNLWLSAAHLAGKLNIEA 173


>SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)
          Length = 842

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 498 RQHCICMQHLKSFSDCAALFCVRSLASSLRED 403
           +  C C Q +K +SDC  L C       ++ D
Sbjct: 288 KSRCKCFQSVKRYSDCDCLGCENPYGKKMQRD 319


>SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -2

Query: 592 QLLNKHNMYRNIEVTVIAVEFRLLGGP*NPNKTALYLYAAFEILF 458
           Q L KHN   N  +TVI V  +   G    NKTA  L  AF+ +F
Sbjct: 492 QSLKKHNSNFNYILTVIDVLSKFAWGVPLKNKTANELVRAFKRIF 536


>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +1

Query: 118 LPQLQCRCGYRHARHRYLCRVPHHIRWCG---RGLHNADSFTQTDRHLLSLVGVALFVAS 288
           LP+L+C CGY  +    LC     +  C    R +H+        R ++  V    ++ S
Sbjct: 294 LPKLKCACGYVRSMCVLLCAQCRRVVMCACACRYVHSVCVMCACVRVVMCAVCACRYLQS 353

Query: 289 GAIII 303
           G +++
Sbjct: 354 GGVVM 358


>SB_30349| Best HMM Match : ABC-3 (HMM E-Value=1.1)
          Length = 201

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
 Frame = -3

Query: 477 QHLKSFSDCAALFCV-RSLASSLREDSINK*DSAIDDGQRGLSQVLVFDLALTIMLESVN 301
           Q LK     +  F V  S+   +   S+    S +  G+  ++ + V  + +TI+  S  
Sbjct: 105 QALKGILGSSLAFAVANSMVFVVYALSLEYGSSLVQSGE--MTPIEVLSVLMTILFGSNA 162

Query: 300 NNGT-----ASDEQGNTDQRKKMSIRL 235
           NNG+     A     NTDQ+++MS+ L
Sbjct: 163 NNGSLGPSHAQASSTNTDQQREMSVSL 189


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 262 VGVALFVASGAIIIDRFQHYGKSEI 336
           VGV ++   G  ++D  QHY K+E+
Sbjct: 536 VGVTVYATQGKNVVDLKQHYNKTEL 560


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,286,356
Number of Sequences: 59808
Number of extensions: 484644
Number of successful extensions: 1248
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)