Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0428
         (727 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014135-114|ABI29182.1|  899|Drosophila melanogaster CG9935-PB,...    29   4.9  
AE014135-113|ABI29183.1|  871|Drosophila melanogaster CG9935-PC,...    29   4.9  

>AE014135-114|ABI29182.1|  899|Drosophila melanogaster CG9935-PB,
           isoform B protein.
          Length = 899

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 416 FQTTYRNSIIKYSLGNMFYTNNSTMTNY*ILVQNQYKVTCFKRVINTK 559
           F TTY + I + + GN  +   STM +Y  +VQ    +T    +++TK
Sbjct: 688 FTTTYEDGIKRVNQGNYAFLMESTMLDY--IVQRDCNLTQIGGLLDTK 733


>AE014135-113|ABI29183.1|  871|Drosophila melanogaster CG9935-PC,
           isoform C protein.
          Length = 871

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 416 FQTTYRNSIIKYSLGNMFYTNNSTMTNY*ILVQNQYKVTCFKRVINTK 559
           F TTY + I + + GN  +   STM +Y  +VQ    +T    +++TK
Sbjct: 688 FTTTYEDGIKRVNQGNYAFLMESTMLDY--IVQRDCNLTQIGGLLDTK 733


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,628,067
Number of Sequences: 53049
Number of extensions: 342705
Number of successful extensions: 627
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)