Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0428
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.73 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.0  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 419 QTTYRNSIIKYSLGNMFYTNNSTMTNY 499
           +T + N+  KY+  N  Y NN+   NY
Sbjct: 321 KTIHNNNNYKYNYNNNNYNNNNYNNNY 347


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 553 YKKHNVNKQREM 588
           YKKH + KQ++M
Sbjct: 847 YKKHQIRKQKKM 858


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 419 QTTYRNSIIKYSLGNMFYTNNSTMTNY 499
           +T + N+  KY+  N  Y NN     Y
Sbjct: 88  RTIHNNNNYKYNYNNNNYNNNCKKLYY 114


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 419 QTTYRNSIIKYSLGNMFYTNNSTMTNY 499
           +T + N+  KY+  N  Y NN     Y
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYY 114


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 419 QTTYRNSIIKYSLGNMFYTNNSTMTNY 499
           +T + N+  KY+  N  Y NN     Y
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYY 114


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 419 QTTYRNSIIKYSLGNMFYTNNSTMTNY 499
           +T + N+  KY+  N  Y NN     Y
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYY 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,611
Number of Sequences: 438
Number of extensions: 3383
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)