Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0427
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53881| Best HMM Match : LSPR (HMM E-Value=1.7)                      28   8.9  
SB_21135| Best HMM Match : Peroxin-13_N (HMM E-Value=0)                28   8.9  

>SB_53881| Best HMM Match : LSPR (HMM E-Value=1.7)
          Length = 331

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 288 VLCLLV*EFI*QRSFARYQII*IFILLVVKCPC 386
           +L  LV E+  QRSFA  + + +F+LL   C C
Sbjct: 238 LLTYLVEEYKFQRSFATTEFVCLFLLLFHTCMC 270


>SB_21135| Best HMM Match : Peroxin-13_N (HMM E-Value=0)
          Length = 383

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 416 SITCVFDAFINLLMNTPFNHFSMFNAFVIIFYKAINY*LCVRLQDSSMNFFKCIVPIIMS 595
           S+  +  AF ++ M     HF+MFN+F  +   A ++    RL++  ++ F  +      
Sbjct: 126 SVESIVQAFGSIAMMLESTHFAMFNSFRAVIGAADHF---SRLKNHLLSAFGAVAIFRTL 182

Query: 596 KYL 604
           KYL
Sbjct: 183 KYL 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,440,883
Number of Sequences: 59808
Number of extensions: 391546
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)