Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0427
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51470.1 68418.m06383 auxin-responsive GH3 family protein sim...    29   3.1  
At1g24000.1 68414.m03030 Bet v I allergen family protein contain...    27   9.6  
At1g18350.1 68414.m02293 mitogen-activated protein kinase kinase...    27   9.6  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    27   9.6  

>At5g51470.1 68418.m06383 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 581

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 595 RHDYWHYTFEKIHGTIL*ADTQSIIYC 515
           R  YWH+++      IL +DT+  +YC
Sbjct: 174 RPSYWHWSYTSPDEVILCSDTKQTLYC 200


>At1g24000.1 68414.m03030 Bet v I allergen family protein contains
           Pfam profile PF00407: Pathogenesis-related protein Bet v
           I family
          Length = 122

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 592 HDYWHYTFEKIHGTIL*ADTQSIIYCLIKYYNK 494
           H  W + FEK+H  I   D  SII   +KY+ K
Sbjct: 82  HVVWTFHFEKVHKDI--DDPHSIIDESVKYFKK 112


>At1g18350.1 68414.m02293 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK7) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 307

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 121 YRHTLKIVRKHFLLEHILVTIRNSIKIFGF 32
           Y H+LKIV +     ++L+  RN +KI  F
Sbjct: 155 YLHSLKIVHRDIKPANLLLNSRNEVKIADF 184


>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
            similar to BEIGE (GI:3928547) [Rattus norvegicus];
            Similar to gb|U70015 lysosomal trafficking regulator from
            Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
            repeats. ESTs gb|T43386 and gb|AA395236 come from this
            gene
          Length = 3601

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 124  YYRHTLKIVRKHFLLEHILVTIR 56
            Y  H L I+R+  L+EH+LVT++
Sbjct: 1606 YRNHNLTILRRINLVEHLLVTLQ 1628


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,577,747
Number of Sequences: 28952
Number of extensions: 287177
Number of successful extensions: 454
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)