Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0426
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.0  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.0  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 102 LWLNSAREQIKSENPGLRV 158
           +W  + R + K +NPGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 283 RWWRRGRKEGSKTREKG 333
           RWW R R+    T + G
Sbjct: 44  RWWSRPREPAQTTSKAG 60


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 516  HFIRLWKVSPVLLCN 472
            H +R W+ S  L CN
Sbjct: 1322 HVVRPWRGSATLACN 1336


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 516  HFIRLWKVSPVLLCN 472
            H +R W+ S  L CN
Sbjct: 1318 HVVRPWRGSATLACN 1332


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 177 GGEIWKSMKDK 209
           GGE+W  ++DK
Sbjct: 450 GGELWTVLRDK 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,883
Number of Sequences: 438
Number of extensions: 2041
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)