Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0423
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1216 - 25344638-25345159,25346011-25346511 31 0.77
11_05_0044 + 18570501-18570654,18571384-18572435 31 1.3
07_03_0501 - 18820554-18821548,18821960-18822182 31 1.3
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698... 30 2.3
06_03_1034 - 27044892-27044983,27045189-27045216,27045514-270459... 29 3.1
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90... 28 7.2
02_04_0545 + 23778769-23779245,23779395-23779688 28 7.2
02_01_0116 + 862401-862734,862823-863078,863177-863311,863395-86... 28 7.2
03_05_0231 - 22170343-22172004,22172225-22172449 28 9.5
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193... 28 9.5
>08_02_1216 - 25344638-25345159,25346011-25346511
Length = 340
Score = 31.5 bits (68), Expect = 0.77
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 541 FTVRTQSSSKNWISCAPIQKGKNKHGPLILIKKPKNGHVPSTHRTHH 681
F +S+ + W+ C K +++ L+++K P + ++P +H HH
Sbjct: 159 FAAARRSTKEEWVICRIFHKVGDQYSKLMMMKSPASYYLPVSH--HH 203
>11_05_0044 + 18570501-18570654,18571384-18572435
Length = 401
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 221 AQEEFNQFYTKCCSKDHLPESERRYRNSIHQSKHQKTWFF 340
AQEEF +Y + DHLP+ + + + +S +K F+
Sbjct: 24 AQEEFVDWYFRVTQSDHLPDLKAKMKRMCDKSAIKKRHFY 63
>07_03_0501 - 18820554-18821548,18821960-18822182
Length = 405
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 224 QEEFNQFYTKCCSKDHLPESERRYRNSIHQSKHQKTWFF 340
Q+E+ FY + +HLPE + + R ++S +K + F
Sbjct: 48 QDEYADFYFRVTKSEHLPELKNKLRRICNKSGIEKRFMF 86
>10_07_0144 -
13367579-13368805,13369540-13369578,13369662-13369826,
13370083-13370193
Length = 513
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 580 SCAPIQKGKNKHGPLILIKKPKNG---HVPSTHRTHHSAYKGG 699
+C+ + ++ + KP NG H P H HHSA GG
Sbjct: 300 ACSEVSSNRDDEQIGNTVAKPANGLQQHPPPPHHHHHSAMNGG 342
>06_03_1034 -
27044892-27044983,27045189-27045216,27045514-27045908,
27046224-27046312,27046352-27046620,27047037-27047270
Length = 368
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 191 GA*RVNISLGAQEEFNQFYTKCCSKDHLPESERRYRNSIHQSKH 322
G+ + +S+ F Y + DHLPE ER NS+ H
Sbjct: 121 GSRNIEVSIPTGTIFG-IYNRLAELDHLPEEERAQLNSLQSGTH 163
>12_01_0119 +
905916-907277,907737-907774,908269-908492,909411-909637,
909733-909980,910275-910557,910707-911135
Length = 936
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = +3
Query: 495 FRGILKPEQLYASTMLHGSNSEFFQELDQLCSDPEREEQTRTIDSHKETEKRACSFDTPH 674
+R + Q+ + + F QE QL R+ + IDS + A TP
Sbjct: 65 YRQNTRRRQISRTASIDFLEDAFLQEFSQLIDLARRQGRETDIDSSSVAPQHASFNSTPS 124
Query: 675 TSFCLQGWDVQDDNS 719
S Q W DD S
Sbjct: 125 QS---QRWHASDDES 136
>02_04_0545 + 23778769-23779245,23779395-23779688
Length = 256
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 630 HKETEKRACSFDTPHTSFCLQGWDVQDDNSP 722
H + + DTP F QGW +Q ++SP
Sbjct: 136 HHQQPAPTVAVDTPSPQFLPQGWALQKESSP 166
>02_01_0116 +
862401-862734,862823-863078,863177-863311,863395-864721
Length = 683
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 344 CEKTM-SFGVWIGVLSSDIVAPTRAGDLLSNIL 249
C+ M +FG W+G+ S +VA AG + +IL
Sbjct: 439 CKIAMFAFGSWVGIKSGGVVAALVAGGITMSIL 471
>03_05_0231 - 22170343-22172004,22172225-22172449
Length = 628
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 612 FVLPFLDRSTTDPVLGRTLSSNREALCSRI 523
FVLP D DP+L R SS+ + + +RI
Sbjct: 6 FVLPRRDNGDGDPILSRHSSSSDDPILARI 35
>01_06_0873 + 32617428-32617532,32618166-32618234,32619195-32619380,
32619687-32619776,32620389-32620462,32621149-32621260,
32621413-32621468,32621826-32621880,32621965-32622021,
32622696-32622797,32623467-32623547,32623756-32623808,
32625245-32625314,32626540-32626603,32627339-32627487,
32627564-32627719,32628011-32628108,32628763-32628847,
32628932-32628997,32629066-32629125,32629408-32629494,
32630307-32630360,32630538-32630576,32630651-32630779,
32630859-32630911,32630984-32631032,32632240-32632298,
32633111-32633259,32633338-32633492,32633719-32633847,
32633932-32634017,32634220-32634335,32634429-32634541,
32635335-32635458,32635540-32635658,32636289-32636490,
32636586-32636757,32637852-32638176,32638442-32638529,
32638970-32639059,32639169-32639370,32639681-32639705
Length = 1450
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 97 FYKNGITSNSSFERLAYIHCTQAYSRDS*LFGSLKS*HFFRSSRRVQSIL--YKMLLKRS 270
F KNGI + S LA I+C Q + + G+L+S + V+S+L Y+++L+ S
Sbjct: 972 FVKNGILNGSKEVALAAINCLQTFVGSNCSKGNLESSY-------VKSVLDIYELVLQTS 1024
Query: 271 P 273
P
Sbjct: 1025 P 1025
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,770,596
Number of Sequences: 37544
Number of extensions: 405046
Number of successful extensions: 1238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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