Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0423
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     33   0.19 
SB_867| Best HMM Match : Leo1 (HMM E-Value=0)                          33   0.26 
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)            29   4.2  
SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7)                   29   5.5  
SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_35673| Best HMM Match : Ribosomal_L32p (HMM E-Value=8.4)            28   7.3  
SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)                     28   7.3  
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   28   9.6  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 28   9.6  
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)                28   9.6  
SB_41032| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)                 28   9.6  

>SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 921

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
 Frame = +1

Query: 475  TVPTASFSEEY*NRNSYTRAQCFTVRTQSSSKNWISCAPIQK--GKNKHGPLIL---IKK 639
            ++PT   S    +RNS TR Q  + R QSSS    S    ++  GK  H  LI    IK+
Sbjct: 817  SLPTRDQSSSTRDRNSSTRDQSSSTRDQSSSTRDQSSITTEQSSGKVNHAKLITDVKIKQ 876

Query: 640  PKNGHVPSTHRTHHSAYKGGMYRTITLPTARQAFIGNTSMDRSL 771
                 +  +    HS  +    ++  L T R+AF  ++  D++L
Sbjct: 877  EPEERIEQSADIVHSPNQIAACKSCVLTTERRAF--SSQRDKNL 918


>SB_867| Best HMM Match : Leo1 (HMM E-Value=0)
          Length = 591

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +3

Query: 549 SNSEFFQELDQLCSDPEREEQTRTIDSHKETEKR 650
           S+++ F E ++L SD E+E+  R ++S +ET+ R
Sbjct: 265 SHADLFGEDEELSSDEEKEDNAREVESKEETQAR 298


>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 24/103 (23%), Positives = 43/103 (41%)
 Frame = +3

Query: 231  SSINSIQNVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKE 410
            S  NS++   ++ T P RS  + ++   P+T           D + FES R         
Sbjct: 1057 SGSNSVEAPRKRATLPRRSSPVISRKPRPDT-----LMRSKSDFERFESHRVTEDSRTSS 1111

Query: 411  PTGERSNRSDSPRKQXXXXXXXXXXXQLFRGILKPEQLYASTM 539
            P  E S R +SPR+            ++ R  +K ++ + S++
Sbjct: 1112 PDAEYSPR-ESPRESLQQRTPRRSHSEVSRLPVKADRQHYSSL 1153


>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
          Length = 446

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +3

Query: 279 SRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKAR------KEPTGERSNRSD 440
           S++DDI     N ++++   F N+  DS++ +     SF A       K PT   S  S 
Sbjct: 85  SQNDDISENNDNDDSQKDDDFPNDDDDSRNSDVDSRNSFDASRSEDACKNPTKVSSQDSR 144

Query: 441 SP 446
           SP
Sbjct: 145 SP 146


>SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7)
          Length = 373

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 437 TPVRPFACWFFSGFKRSRSTTFKMFRVLR 351
           TP  P  CW ++  K +R TT ++ ++ +
Sbjct: 129 TPTGPHCCWHYTSTKTTRETTTRLVQMCK 157


>SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 525 YASTMLHGSNSEFFQELDQLCSDPEREEQTR---TIDSHKETEKRA 653
           +  TM   S SE  QEL +L  DPE +E T    +ID+ K  +  A
Sbjct: 54  HVKTMAEESMSEASQELKELKGDPESQEPTNCAISIDTGKVLDVEA 99


>SB_35673| Best HMM Match : Ribosomal_L32p (HMM E-Value=8.4)
          Length = 207

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 497 PRNIETGTVI-REHNASRFELRVLPRTGSVVLRSRKGRTNT 616
           P+N +T T + R HN+S   +    RTG  +   R G TNT
Sbjct: 44  PKNKKTNTTLTRAHNSSNLAIGTCTRTGQYIRPLRLG-TNT 83


>SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)
          Length = 1176

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 240 NSIQNVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPR 389
           +S+Q  A      S   D G  Y NP+   H    +  Q+ KH+E+ R +
Sbjct: 500 DSLQQGAPSQILASVELDEGKIYLNPSDPTHDVLGSLEQEVKHYENVRKK 549


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 564 FQELDQLCSDPEREEQTRTIDSHKETEKRACSFDTPHTS 680
           F+ L+Q  S+P R+ +  T D  K   KR C+ +  + S
Sbjct: 493 FKALEQQQSNPPRKHKFHTQDPEKTPAKRVCTSNEKNNS 531


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 260 SKDHLPESERRYRNSIHQSKHQK 328
           S+D   + ERR RN IH  K QK
Sbjct: 143 SRDETGDFERRLRNEIHDLKEQK 165


>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
          Length = 1281

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 597  EREEQTRTIDSHKETEKRACSFD-TPHTSFCLQ 692
            ER EQ+  IDS  +   R CS D T  TS  LQ
Sbjct: 1216 ERREQSHAIDSGSKPAHRKCSVDSTSKTSQLLQ 1248


>SB_41032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 522 LYASTMLHGSNSEFFQELDQLCSDPEREEQTRTIDSHK 635
           L AS  L  +NS+   E D  C + E+E+  R +D+HK
Sbjct: 113 LKASEELESANSKL--ESDIACLNAEKEQLERMLDAHK 148


>SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +2

Query: 212 SLGAQEEFNQFYTKCCSKDHLPESERRYRNSIHQSKHQKTW 334
           ++ AQ EF +       ++ + +S +RY+ ++ ++KH   W
Sbjct: 308 AMEAQAEFTKLLEDAIIENDIAQSVQRYQLAVQEAKHDCRW 348


>SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)
          Length = 698

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 568 KNWISCAPI-QKGKNKHGPLILIKKPKNGHVPSTHRTHHSAYKGGMYRTITLPTARQAFI 744
           K W    PI +K +N+ G  +L     + H+  TH      Y  G++  I +  ++  F+
Sbjct: 8   KFWRKVTPIYRKDRNEFGGGVL--SAFSNHLVVTHEEQMDGYYEGIWSKINIAGSKSLFV 65

Query: 745 GN 750
           G+
Sbjct: 66  GS 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,758,513
Number of Sequences: 59808
Number of extensions: 512678
Number of successful extensions: 2361
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2357
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)