Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0423
(774 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35604-6|CAA84681.1| 305|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical pr... 30 1.6
U53139-5|AAK18933.2| 322|Caenorhabditis elegans Serpentine rece... 30 1.6
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 30 2.1
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 30 2.1
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF063007-7|AAC16428.1| 659|Caenorhabditis elegans Hypothetical ... 28 6.4
AF022985-13|AAB69968.1| 375|Caenorhabditis elegans Hypothetical... 28 8.5
>Z35604-6|CAA84681.1| 305|Caenorhabditis elegans Hypothetical
protein ZK1058.6 protein.
Length = 305
Score = 31.5 bits (68), Expect = 0.69
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 717 SYRPVHPTLVGRMMCAVCRRN-MPVFRF-LYENQWSVFVLPFLD 592
S PV T VG++ A+C N MP++R LY + +++ P +D
Sbjct: 145 STMPVFSTSVGKIGSAICWENYMPLYRMTLYSKEIQIYLAPTVD 188
>Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical
protein R04F11.3 protein.
Length = 385
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 351 SQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 452
SQDS F SSR +S + K P +R +D +K
Sbjct: 245 SQDSDEFPSSREQSVEKEKSPPAKRKRVNDENKK 278
>U53139-5|AAK18933.2| 322|Caenorhabditis elegans Serpentine
receptor, class xa protein4 protein.
Length = 322
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 44 ILYLLRRLKHCSFKFDSFFTKTESHRTLVL 133
I YL+R CS F +F +T+S R LVL
Sbjct: 266 ITYLVRLFAFCSLNFFVYFVETKSTRNLVL 295
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 259 LKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGL 429
L +S R+G ++++L T + + + FSQ L + ++K +D + +K A L
Sbjct: 1053 LDQSANRLGTSLADLRTSVNDAQQLNFSQQLLYSEELIKELDDQLVNTQKRAIAREL 1109
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 259 LKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGL 429
L +S R+G ++++L T + + + FSQ L + ++K +D + +K A L
Sbjct: 1053 LDQSANRLGTSLADLRTSVNDAQQLNFSQQLLYSEELIKELDDQLVNTQKRAIAREL 1109
>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
protein C27B7.4 protein.
Length = 1274
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 391 RLKPEKNQQANGLTGVIHQGNNGVMP 468
+L+ ++ QQ L G++ GNNG+MP
Sbjct: 653 QLQQQQQQQQQQLQGMMMMGNNGMMP 678
>Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 699 PTLVGRMMCAVCRRNMPVF-RFLYENQWSVFVL 604
P+L+G M+ + RN+P F Y N++ F+L
Sbjct: 95 PSLIGCMLVGIAMRNVPQFGELFYINEYWQFIL 127
>Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 699 PTLVGRMMCAVCRRNMPVF-RFLYENQWSVFVL 604
P+L+G M+ + RN+P F Y N++ F+L
Sbjct: 95 PSLIGCMLVGIAMRNVPQFGELFYINEYWQFIL 127
>AF063007-7|AAC16428.1| 659|Caenorhabditis elegans Hypothetical
protein R119.5 protein.
Length = 659
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 543 HGSNSEFFQELDQLCSDPEREEQTRTIDSHKETEKRACSFDTPHTS 680
+G SE QEL +P+ T T E E+ CS D T+
Sbjct: 527 NGDLSEDEQELSDALEEPQESPSTSTESQVSEDEEPCCSTDPASTT 572
>AF022985-13|AAB69968.1| 375|Caenorhabditis elegans Hypothetical
protein T15B7.15 protein.
Length = 375
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 552 NSEFFQELDQLCSDPE-REEQTR--TIDSHKETEKR 650
NS+ Q++ L D RE+QTR TIDSHK K+
Sbjct: 295 NSDKCQKMTSLLEDQLLREQQTRKATIDSHKAQNKK 330
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,685,368
Number of Sequences: 27780
Number of extensions: 383794
Number of successful extensions: 1433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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