Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0420
         (459 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4TE65 Cluster: Chromosome undetermined SCAF5629, whole...    47   2e-04
UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico...    46   3e-04
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=...    40   0.020
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea...    38   0.14 
UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recogniti...    36   0.32 
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea...    35   0.73 
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea...    33   2.2  
UniRef50_A3JEH2 Cluster: Phosphoserine phosphatase; n=2; Gammapr...    32   6.8  
UniRef50_A6EX81 Cluster: Diacylglycerol kinase related protein; ...    31   9.0  

>UniRef50_Q4TE65 Cluster: Chromosome undetermined SCAF5629, whole
           genome shotgun sequence; n=3; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF5629,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 73

 Score = 46.8 bits (106), Expect = 2e-04
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
 Frame = +2

Query: 347 GVTRMDRIRXEYVRGSLKVAT--EKLRSARLEWYGHVMK 457
           GVTRMD I+ EY+RG+  V    +K+R  RL W+GHV +
Sbjct: 31  GVTRMDEIKKEYIRGTAHVRCFGDKVRETRLRWFGHVQR 69


>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
           eudicotyledons|Rep: Polyprotein, putative - Solanum
           demissum (Wild potato)
          Length = 868

 Score = 46.4 bits (105), Expect = 3e-04
 Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
 Frame = +2

Query: 341 VCGVTRMDRIRXEYVRGSLKVAT--EKLRSARLEWYGHVMK 457
           +CG TR D+IR E +R  + VA+  +KLR ARL W+GHV +
Sbjct: 590 MCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKR 630


>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
           Papilionoideae|Rep: Reverse transcriptase family member
           - Glycine max (Soybean)
          Length = 377

 Score = 40.3 bits (90), Expect = 0.020
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +2

Query: 341 VCGVTRMDRIRXEYVRGSLKVA--TEKLRSARLEWYGHV 451
           +CG TR D+IR E +R  + VA   EK+   RL W+GHV
Sbjct: 274 MCGKTRQDKIRNEAIRERVGVAPIVEKMVENRLRWFGHV 312


>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=5;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 1030

 Score = 37.5 bits (83), Expect = 0.14
 Identities = 15/46 (32%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
 Frame = +2

Query: 329  CCDGVCGVTRMDRIRXEYVRGSLKV---ATEKLRSARLEWYGHVMK 457
            C   + GVTR+D+IR  +++ SL +     +K+ + R++++GHV++
Sbjct: 910  CLRRIMGVTRLDKIRNTHIKESLNLDQDVMDKVSTKRIKYFGHVLR 955


>UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recognition
           motif); Calcium-binding EF- hand; n=1; Medicago
           truncatula|Rep: RNA-binding region RNP-1 (RNA
           recognition motif); Calcium-binding EF- hand - Medicago
           truncatula (Barrel medic)
          Length = 559

 Score = 36.3 bits (80), Expect = 0.32
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 347 GVTRMDRIRXEYVRGSLKVA--TEKLRSARLEWYGHV 451
           G TR DRIR + +R  + VA   EKL   RL W+GHV
Sbjct: 318 GKTRHDRIRNDTIRERVGVAPIVEKLVENRLRWFGHV 354


>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial; n=7;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial -
           Strongylocentrotus purpuratus
          Length = 787

 Score = 35.1 bits (77), Expect = 0.73
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 329 CCDGVCGVTRMDRIRXEYVRGSLKVAT---EKLRSARLEWYGHVMK 457
           C   + GV  MD+IR E +R  L + +   E++    L+W+GHV++
Sbjct: 410 CLRTILGVHLMDKIRNEEIRQRLNIPSTICEEITKRCLKWFGHVLR 455


>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase; n=2;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase - Strongylocentrotus
           purpuratus
          Length = 958

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 329 CCDGVCGVTRMDRIRXEYVRGSL---KVATEKLRSARLEWYGHV 451
           C   + GVTR DR+R  ++R  L   +   +++ + RL ++GH+
Sbjct: 823 CLRRIMGVTRFDRLRNTHIRTQLNMEETIIDRVATKRLRYFGHI 866


>UniRef50_A3JEH2 Cluster: Phosphoserine phosphatase; n=2;
           Gammaproteobacteria|Rep: Phosphoserine phosphatase -
           Marinobacter sp. ELB17
          Length = 231

 Score = 31.9 bits (69), Expect = 6.8
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 451 HMSIPFQTRTSQLLCCHFQTSSNIFXPYSIHSRYSTHPIATFASLLHAIAFHPTIVNENF 272
           H+    QT+ ++LL  H ++  +     +  + + T PIA    + H IA +P +VN  F
Sbjct: 97  HVQPMLQTKAAELLHQH-RSQGHTLMIITATNHFITRPIADLLGIEHLIATNPEVVNGRF 155


>UniRef50_A6EX81 Cluster: Diacylglycerol kinase related protein;
           n=1; Marinobacter algicola DG893|Rep: Diacylglycerol
           kinase related protein - Marinobacter algicola DG893
          Length = 290

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 142 AGQYITNNYS*HVFFFFWNEVPYRALRNGALDGLMLRPKVVTTLF 8
           AG+++T   S   FF   NE+P  +  +G LD + +RP+ +  LF
Sbjct: 178 AGRWLTIAVSSGAFFGGGNEIPQASAGDGQLDVVAVRPRSLLQLF 222


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,320,352
Number of Sequences: 1657284
Number of extensions: 7416668
Number of successful extensions: 16205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16193
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)