Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0420
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   3.2  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    25   7.3  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    24   9.7  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    24   9.7  

>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 291  LLLMRIFFKNCRNLDDKLNDRNLYVPSSP 205
            LL  R F+ +   LDD   D+NL+   SP
Sbjct: 987  LLKERKFWPSVARLDDAYGDKNLFCTCSP 1015


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 318 CCTQSPFILLLLMRIFFKNCRNLDDKLNDRNLYVP 214
           C T + F+L +  RI   N R+ D    +  L +P
Sbjct: 173 CLTNAAFVLAMRKRIKLTNFRDFDTMFYNNLLSIP 207


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 232 SKSVCAFFSLNFSLIGRIACRLVSLITTLCAGQYITNNYS*HVFFFF 92
           S+S  +FF++ +     I   ++ L T L +  Y+T++Y   +F  F
Sbjct: 281 SRSSISFFTVPYLRTLAITQFIILLFTILQSALYLTSSYHFVLFLIF 327


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 445 SIPFQTRTSQLLCCHFQTSS--NIFXPYSIHSR 353
           S+ + +    +L   FQT+S  NIF PY I SR
Sbjct: 14  SLKYASNRVGILIPPFQTASSLNIFRPYVIFSR 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,863
Number of Sequences: 5004
Number of extensions: 34318
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)