Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0420
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0022 + 13865093-13865195,13865452-13865587,13865864-13866218 29 1.8
04_03_0381 - 15163425-15164903 28 3.1
04_03_0380 - 15150814-15152304 28 3.1
04_03_0348 + 14735581-14737071 28 3.1
08_02_0607 + 19285580-19286138,19286734-19287668 28 4.2
04_03_0354 + 14830325-14830826,14831491-14832416 28 4.2
04_03_0347 + 14723118-14724548 28 4.2
04_03_0323 - 14364145-14365656 27 5.5
11_02_0052 + 7788655-7789850,7789921-7790011 27 7.3
06_02_0181 - 12694304-12694398,12694512-12695547 27 7.3
06_01_0099 + 824557-825532,826090-826245,826422-828064 27 7.3
07_03_0036 + 12694304-12694408,12694551-12694652,12694867-126949... 27 9.6
04_03_0369 + 15012906-15014417 27 9.6
>09_04_0022 + 13865093-13865195,13865452-13865587,13865864-13866218
Length = 197
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 123 IIIHNMFFFFFGTKFLI 73
+ +HNM FF FG+KFLI
Sbjct: 26 LALHNMHFFDFGSKFLI 42
>04_03_0381 - 15163425-15164903
Length = 492
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 382 IFXPYSIHSRYSTHPIATFASLLHAIAFHPTIVNENF 272
+ PY + P+ A LLHA FH T VN F
Sbjct: 9 VMIPYPAQGHIT--PMMKLAKLLHARGFHVTFVNTEF 43
>04_03_0380 - 15150814-15152304
Length = 496
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 382 IFXPYSIHSRYSTHPIATFASLLHAIAFHPTIVNENF 272
+ PY + P+ A LLHA FH T VN F
Sbjct: 14 VMVPYPAQGHVT--PMLKLAKLLHARGFHVTFVNTEF 48
>04_03_0348 + 14735581-14737071
Length = 496
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 382 IFXPYSIHSRYSTHPIATFASLLHAIAFHPTIVNENF 272
+ PY + P+ A LLHA FH T VN F
Sbjct: 14 VMVPYPAQGHVT--PMLKLAKLLHARGFHVTFVNTEF 48
>08_02_0607 + 19285580-19286138,19286734-19287668
Length = 497
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 382 IFXPYSIHSRYSTHPIATFASLLHAIAFHPTIVNENF 272
+ PY + P+ A LLHA FH T VN F
Sbjct: 21 VMVPYPAQGHVT--PMLKLAVLLHARGFHVTFVNNEF 55
>04_03_0354 + 14830325-14830826,14831491-14832416
Length = 475
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 382 IFXPYSIHSRYSTHPIATFASLLHAIAFHPTIVNENF 272
+ PY + P+ A LLHA FH T VN F
Sbjct: 21 VMVPYPAQGHVT--PMLKLAVLLHARGFHVTFVNNEF 55
>04_03_0347 + 14723118-14724548
Length = 476
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 340 PIATFASLLHAIAFHPTIVNENF 272
P+ A LLHA FH T VN F
Sbjct: 12 PMMKLAKLLHARGFHVTFVNTEF 34
>04_03_0323 - 14364145-14365656
Length = 503
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 340 PIATFASLLHAIAFHPTIVNENF 272
P A LLHA FH T+VN F
Sbjct: 24 PTLHLAKLLHARGFHVTLVNTEF 46
>11_02_0052 + 7788655-7789850,7789921-7790011
Length = 428
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +2
Query: 335 DGVCGVTRMDR----IRXEYVRGSLKVATEKLRSA 427
D VC V R + R E++RG+L + +KLRSA
Sbjct: 241 DAVCTVARNNEGTIAARMEFLRGTLGCSMDKLRSA 275
>06_02_0181 - 12694304-12694398,12694512-12695547
Length = 376
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 335 DGVCGVTRMDRIRXEYVRGSLKVATEKLRSARL 433
DG+ G MDR R + VR ++ TE + + L
Sbjct: 104 DGILGADLMDRCRAQSVRFGTRILTETVTAVDL 136
>06_01_0099 + 824557-825532,826090-826245,826422-828064
Length = 924
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 451 HMSIPFQTRTSQLLCCHFQTSSNIFXPYSIHSRYSTHPI 335
H S P T Q LC F T N F P+ + +P+
Sbjct: 383 HKSQPVSVPTCQYLCFDFLTHPNSFSPHHRAPAMAPYPL 421
>07_03_0036 +
12694304-12694408,12694551-12694652,12694867-12694947,
12696475-12696525,12697308-12697473,12698759-12698877,
12698975-12699073,12699684-12699764,12699845-12699927,
12701177-12701402,12704272-12704439,12706408-12706800
Length = 557
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 420 LSFSVATFRLPLTYSXRILSILVTPHTPSQHSHLCCTQSPFILLLLMRIFFKNCRNLDDK 241
L +V T L L R L++ V T ++ L P+++L + +F + +DD
Sbjct: 289 LGVNVDTSELELKPQGR-LTVTVVKATSLKNKELIGKSDPYVILYVRPMFKVKTKVIDDN 347
Query: 240 LN 235
LN
Sbjct: 348 LN 349
>04_03_0369 + 15012906-15014417
Length = 503
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 340 PIATFASLLHAIAFHPTIVNENF 272
P A LLHA FH T VN F
Sbjct: 24 PTLHLAKLLHARGFHVTFVNTEF 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,174,778
Number of Sequences: 37544
Number of extensions: 199591
Number of successful extensions: 402
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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