Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0420
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_50691| Best HMM Match : C2 (HMM E-Value=2.8e-17)                    27   9.9  
SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06)                 27   9.9  
SB_4450| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  
SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_38537| Best HMM Match : VWA (HMM E-Value=0)                         27   9.9  
SB_27259| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 456 FITCPYHSKRALLSFSVATFRLPLTYSXRILSILVTPHTPSQHSHLCC 313
           +ITC YH + ++++FS  +  + +T        +VT    S H H+ C
Sbjct: 423 YITCLYHHRLSVVTFSDESVHVYITCLYHHRLSVVTFSDESVHVHVTC 470


>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 329 CCDGVCGVTRMDRIRXE--YVRGSLKVATEKLRSARLEWYGHVMK 457
           C   +CG+   + I  E  Y   S      ++R  RL+W GHV++
Sbjct: 11  CLRRICGIFWPNVISNEELYKNTSSSSLVNQIRYRRLKWLGHVLR 55


>SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 353 TRMDRIRXEYVRGSLKVATEKLRSARLEWYGHV 451
           T +  IR      SL++A   LR ARL+W+GHV
Sbjct: 28  TSLSTIRDRLGIESLELA---LRKARLQWFGHV 57


>SB_50691| Best HMM Match : C2 (HMM E-Value=2.8e-17)
          Length = 430

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -1

Query: 327 SHLCCTQSPFILLLLMRIFF-KNCRNLDDKLNDRNLYV 217
           S+L C    FI+ LL  I++ KNCR L+D++ +  + V
Sbjct: 44  SYLWCL---FIIPLLFTIWYRKNCRILEDRVREAEIKV 78


>SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06)
          Length = 530

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 320 RCECCDGVCGVTRMDRIRXEYV--RGSLKVATEKLRSARLEWYGHVMK 457
           RC C   + G+   D++    V  R  L      LR  RL W GHV +
Sbjct: 358 RCLC--RILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 403


>SB_4450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 320 RCECCDGVCGVTRMDRIRXEYV--RGSLKVATEKLRSARLEWYGHVMK 457
           RC C   + G+   D++    V  R  L      LR  RL W GHV +
Sbjct: 238 RCLC--RILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 283


>SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1761

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 394  TSSNIFXPYSIHSRYSTHPIATFASLLHAIAFHPTIV 284
            TS+N   P ++H    THP  T+     A   + TI+
Sbjct: 1719 TSTNTLPPINLHPNAPTHPATTYPMDRAAHRHYTTII 1755


>SB_38537| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1174

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/60 (21%), Positives = 25/60 (41%)
 Frame = +2

Query: 278 LINNSRMKGDCVQQRCECCDGVCGVTRMDRIRXEYVRGSLKVATEKLRSARLEWYGHVMK 457
           ++N     GDC + R +CC   C    + +++  +V   +    +   S   E Y  V +
Sbjct: 489 VVNECESDGDCNEARLKCCLRGCAKKCVPKVKTCFVPIDVAFIMDNSESVSSEKYDFVKR 548


>SB_27259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 329 CCDGVCGVTRMDRIRXE--YVRGSLKVATEKLRSARLEWYGHVMK 457
           C   +CG+   + I  +  Y   S      ++R  RL+W GHV++
Sbjct: 11  CLRRICGIFWPNVISNQELYKNTSSSSLVNQIRYRRLKWLGHVLR 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,464,404
Number of Sequences: 59808
Number of extensions: 244291
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)