Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0420
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    29   1.1  
At4g09260.1 68417.m01534 hypothetical protein nearly identical w...    28   2.6  
At4g09210.1 68417.m01526 hypothetical protein                          28   2.6  
At3g60850.1 68416.m06807 expressed protein                             28   3.5  
At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putati...    27   4.6  
At1g33250.1 68414.m04110 fringe-related protein + weak similarit...    27   6.1  
At5g26680.1 68418.m03171 endonuclease, putative similar to Swiss...    27   8.1  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    27   8.1  

>At2g45540.1 68415.m05663 WD-40 repeat family protein /
           beige-related contains Pfam PF02138: Beige/BEACH domain;
           contains Pfam PF00400: WD domain, G-beta repeat (3
           copies)
          Length = 2946

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -1

Query: 420 LSFSVATFRLPLTYSXRILSILVTPHTPSQHSHLCCTQSPFILLLLMRIFFKNCRNLDDK 241
           LS S  T   P+    RI+S+ +  H P  +  LC TQ P IL  ++     +  +LD K
Sbjct: 709 LSLSTVTLAAPV---FRIMSVAIQ-H-PGNNEELCRTQGPEILARILSYLLHSLASLDRK 763


>At4g09260.1 68417.m01534 hypothetical protein nearly identical with
           protein T8A17_40 cause of location on repetitive section
          Length = 154

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -1

Query: 453 ITCPYHSKRALLSFSVATFRLPLTYSXRILSILVTPHTPSQHSHLCCT---QSPFILLLL 283
           I  P H+  + + F   T  L L     I+ I+VTP   S+  H C T    SPFI  LL
Sbjct: 5   IYLPLHAASSHIVFITIT-SLSLISISAIIIIVVTPELTSRWGHDCLTWLVSSPFITGLL 63


>At4g09210.1 68417.m01526 hypothetical protein
          Length = 154

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -1

Query: 453 ITCPYHSKRALLSFSVATFRLPLTYSXRILSILVTPHTPSQHSHLCCT---QSPFILLLL 283
           I  P H+  + + F   T  L L     I+ I+VTP   S+  H C T    SPFI  LL
Sbjct: 5   IYLPLHAASSHIVFITIT-SLSLISISAIIIIVVTPELTSRWGHDCLTWLVSSPFITGLL 63


>At3g60850.1 68416.m06807 expressed protein 
          Length = 648

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 200 LFAYRSHRLQIGIANNDIVRWSIHN 126
           L A +SH  +I + +ND+V WS H+
Sbjct: 491 LVAEKSHSDEILVGDNDLVHWSDHH 515


>At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putative
           similar to UDP-glucose glucosyltransferase GI:3928543
           from [Arabidopsis thaliana]
          Length = 489

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 343 HPIATFASLLHAIAFHPTIVNENF 272
           +P+   A LLHA  FH T VN ++
Sbjct: 26  NPMLKLAKLLHARGFHVTFVNTDY 49


>At1g33250.1 68414.m04110 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 548

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 361 HSRYSTHPIATFASLLHAIAFHP 293
           H   S+HPIA F S+ H  A +P
Sbjct: 335 HGLLSSHPIAPFVSIHHVEAVNP 357


>At5g26680.1 68418.m03171 endonuclease, putative similar to
           Swiss-Prot:P39748 FLAP endonuclease-1 (Maturation factor
           1) (MF1) [Homo sapiens]
          Length = 453

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +2

Query: 308 CVQQRCECCDGVCGVTRMDRIRXEYVRGSLKVATEKLRSARLE 436
           C+   C+ CD + G+     ++     GS++   E L   R +
Sbjct: 228 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQ 270


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 147 NVVISDTNLQAMRP-ISEKFREKKAHTDFDHSIYHQDSGNF*RKFSL 284
           NV +SD N + MRP  S  +      TD+D S Y+ D   F RK +L
Sbjct: 556 NVSLSDLN-EGMRPGHSNVYSSYGGSTDYDTSQYNDDMIKF-RKMAL 600


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,274,016
Number of Sequences: 28952
Number of extensions: 170297
Number of successful extensions: 370
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)