Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0419
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              174   6e-44
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     32   0.48 
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   30   1.9  
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  29   3.4  
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)             29   3.4  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   4.4  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   4.4  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   4.4  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   4.4  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   7.7  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   7.7  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  174 bits (424), Expect = 6e-44
 Identities = 83/98 (84%), Positives = 91/98 (92%), Gaps = 1/98 (1%)
 Frame = +2

Query: 221 QTREHLLVF-FTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 397
           +T EH+ +F   IKEFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 398 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNR 511
           H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGN+
Sbjct: 84  HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNK 121



 Score =  135 bits (326), Expect = 5e-32
 Identities = 61/87 (70%), Positives = 66/87 (75%)
 Frame = +1

Query: 502 G*QIGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 681
           G +IGKPHTVPCKVTGKCGS  VRLIP PRGTGIVSAPVPKKLLQMAG++DCYTS RG T
Sbjct: 119 GNKIGKPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQT 178

Query: 682 GTLGNFXXXXXXXXXXXXXXLTPDLWR 762
            TLGNF              LTPD+W+
Sbjct: 179 ATLGNFAKATFAAISETYAYLTPDMWK 205



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/30 (76%), Positives = 25/30 (83%)
 Frame = +3

Query: 171 WVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           WVPVTKLGRLV++ KI  LE IYLFSLP K
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIK 37


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -2

Query: 472 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 293
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292

Query: 292 RAEEEI 275
           R ++E+
Sbjct: 293 RNQDEL 298


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -2

Query: 472 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 293
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576

Query: 292 RAEEEI 275
           R ++E+
Sbjct: 577 RNQDEL 582


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 195 GRVW*QEPTLSGLPCRAHDHGRDHDRVHEDRHGLYLH 85
           G +W +   L  LP     H  DHDR H  RH   +H
Sbjct: 103 GFLWQKNGVLLSLPPPQFRHSHDHDRHHYHRHHNNIH 139


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -2

Query: 445 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 314
           N  G  LA  +   N+  +V NG K  + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147


>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
          Length = 394

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 654 ILYTSHLKKLLRNWRRHNTSTTRIRNQPDCYGTTLAGDLARDGVWLSYLL 505
           +LYT +  +  RN++ +NT  T +  Q +   TT+   L  D   LS LL
Sbjct: 238 LLYTRNSTRTARNYQYYNTRET-LHGQRETINTTIHAKLYTDSEKLSILL 286



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 654 ILYTSHLKKLLRNWRRHNTSTTRIRNQPDCYGTTLAGDLARDGVWLSYLL 505
           +LYT +  +  RN++ +NT  T  R Q +   TT+   L  D   LS L+
Sbjct: 36  LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 84



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 654 ILYTSHLKKLLRNWRRHNTSTTRIRNQPDCYGTTLAGDLARDGVWLSYLL 505
           +LYT +  +  RN++ +NT  T  R Q +   TT+   L  D   LS L+
Sbjct: 285 LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 333


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 299 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 412
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 299 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 412
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 299  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 412
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 299 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 412
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 299 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 412
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 299 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 412
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 349 TAHTFQGICCHWRQQRSYW 405
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 347 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 436
           G++ + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,295,855
Number of Sequences: 59808
Number of extensions: 595674
Number of successful extensions: 1646
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)