Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0419
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   143   1e-34
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of...    28   6.8  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    28   9.0  
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   9.0  
AC024817-38|AAF59578.1|  608|Caenorhabditis elegans Hypothetical...    28   9.0  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  143 bits (347), Expect = 1e-34
 Identities = 70/86 (81%), Positives = 77/86 (89%)
 Frame = +2

Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
           IKEFEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEV
Sbjct: 85  IKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEV 143

Query: 434 ATAIRGAIILAKLSVLPVRRGYWGNR 511
           ATAIRGAI+ AKL+V+PVRRGYWGN+
Sbjct: 144 ATAIRGAIVAAKLAVVPVRRGYWGNK 169



 Score =  131 bits (316), Expect = 7e-31
 Identities = 60/87 (68%), Positives = 66/87 (75%)
 Frame = +1

Query: 502 G*QIGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 681
           G +IG PHTVPCKVTGKC SV VRLIP PRGTGIVSAPVPKKLL MAG++DCYT+A+GST
Sbjct: 167 GNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGST 226

Query: 682 GTLGNFXXXXXXXXXXXXXXLTPDLWR 762
            TLGNF              LTPDLW+
Sbjct: 227 ATLGNFAKATYAALQRTYSYLTPDLWK 253



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/35 (68%), Positives = 26/35 (74%)
 Frame = +3

Query: 156 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           E + EW PVTKLGRLV+E KI  LE IYL SLP K
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 490 KRLLG*QIGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCYTSA 669
           ++L   ++ +  T+      +C +  V     PRG G+   P   K+ +  G++D Y   
Sbjct: 195 RKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKV 254

Query: 670 RGST 681
            GST
Sbjct: 255 EGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 490 KRLLG*QIGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCYTSA 669
           ++L   ++ +  T+      +C +  V     PRG G+   P   K+ +  G++D Y   
Sbjct: 195 RKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKV 254

Query: 670 RGST 681
            GST
Sbjct: 255 EGST 258


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 376 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 290
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 376 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 290
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of
           mec and unc defectsprotein 2 protein.
          Length = 547

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 150 RAHDHGRDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQR 31
           R+ D  RD DR + DR   Y  +   +RRE     R +QR
Sbjct: 354 RSRDRDRDRDRDNRDR---YFEKSANSRREEEQNRREQQR 390


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 642 SHLKKLLRNWRRHNTSTTRIRNQPDCYGTTLAGDL 538
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 156 PCRAHDHGRDHDRVHEDRHG-LYLHRVIRNRRENRHVHR 43
           P RAH+ G+ H+R H   HG    H   RNR  N   +R
Sbjct: 60  PARAHNRGQHHNRGH--HHGPPRNHNQDRNRHRNHDGNR 96


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 156  PCRAHDHGRDHDRVHEDRHG-LYLHRVIRNRRENRHVHR 43
            P RAH+ G+ H+R H   HG    H   RNR  N   +R
Sbjct: 904  PARAHNRGQHHNRGH--HHGPPRNHNQDRNRHRNHDGNR 940


>AC024817-38|AAF59578.1|  608|Caenorhabditis elegans Hypothetical
           protein Y54G2A.20 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 219 DKLESIYLFSLPSKNSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRHLLPLATTTV 398
           D  +    F+LP +N  +       P  M  L+   ++   + D+ +VSR+ L L T TV
Sbjct: 266 DPADGFRHFTLPDENGLNFTLVVITPQHMENLKKYSHKMVLLDDTHNVSRYGLKLTTITV 325

Query: 399 I 401
           I
Sbjct: 326 I 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,799,973
Number of Sequences: 27780
Number of extensions: 420646
Number of successful extensions: 1162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)