Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0419
(806 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 161 5e-40
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 161 7e-40
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 159 2e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 159 2e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 159 2e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 159 2e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 31 0.68
At1g72390.1 68414.m08373 expressed protein 31 0.68
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 2.7
At3g63100.1 68416.m07087 glycine-rich protein 29 3.6
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 3.6
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr... 29 4.8
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 6.3
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 28 6.3
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 8.4
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 8.4
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 8.4
At3g01450.1 68416.m00069 expressed protein 28 8.4
At2g37930.1 68415.m04656 expressed protein 28 8.4
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 8.4
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 161 bits (391), Expect = 5e-40
Identities = 73/98 (74%), Positives = 85/98 (86%)
Frame = +2
Query: 218 RQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 397
+Q + L +KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 398 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNR 511
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGN+
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 167
Score = 122 bits (293), Expect = 4e-28
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +1
Query: 502 G*QIGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 681
G +IGKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 165 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 224
Query: 682 GTLGNFXXXXXXXXXXXXXXLTPDLWRISR 771
TLGNF LTP+ W+ +R
Sbjct: 225 KTLGNFVKATFDCLQKTYGFLTPEFWKETR 254
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++++WVPVTKLGRLV G I ++E IYL SLP K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 161 bits (390), Expect = 7e-40
Identities = 70/86 (81%), Positives = 82/86 (95%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEV
Sbjct: 73 VKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEV 132
Query: 434 ATAIRGAIILAKLSVLPVRRGYWGNR 511
ATAIRGAIILAKLSV+P+RRGYWGN+
Sbjct: 133 ATAIRGAIILAKLSVVPIRRGYWGNK 158
Score = 122 bits (293), Expect = 4e-28
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +1
Query: 502 G*QIGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 681
G +IGKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 156 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 215
Query: 682 GTLGNFXXXXXXXXXXXXXXLTPDLWRISR 771
TLGNF LTP+ W+ +R
Sbjct: 216 KTLGNFVKATFDCLQKTYGFLTPEFWKETR 245
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++++WVPVTKLGRLV+EGKI K+E IYL SLP K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 159 bits (387), Expect = 2e-39
Identities = 71/86 (82%), Positives = 81/86 (94%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 434 ATAIRGAIILAKLSVLPVRRGYWGNR 511
ATAIRGAIILAKLSV+PVRRGYWGN+
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 122 bits (293), Expect = 4e-28
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +1
Query: 502 G*QIGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 681
G +IGKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 223
Query: 682 GTLGNFXXXXXXXXXXXXXXLTPDLWRISR 771
TLGNF LTP+ W+ +R
Sbjct: 224 KTLGNFVKATFDCLQKTYGFLTPEFWKETR 253
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 159 bits (387), Expect = 2e-39
Identities = 71/86 (82%), Positives = 81/86 (94%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 434 ATAIRGAIILAKLSVLPVRRGYWGNR 511
ATAIRGAIILAKLSV+PVRRGYWGN+
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 122 bits (293), Expect = 4e-28
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +1
Query: 502 G*QIGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 681
G +IGKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 223
Query: 682 GTLGNFXXXXXXXXXXXXXXLTPDLWRISR 771
TLGNF LTP+ W+ +R
Sbjct: 224 KTLGNFVKATFDCLQKTYGFLTPEFWKETR 253
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 159 bits (387), Expect = 2e-39
Identities = 71/86 (82%), Positives = 81/86 (94%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 434 ATAIRGAIILAKLSVLPVRRGYWGNR 511
ATAIRGAIILAKLSV+PVRRGYWGN+
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 122 bits (293), Expect = 4e-28
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +1
Query: 502 G*QIGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 681
G +IGKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 223
Query: 682 GTLGNFXXXXXXXXXXXXXXLTPDLWRISR 771
TLGNF LTP+ W+ +R
Sbjct: 224 KTLGNFVKATFDCLQKTYGFLTPEFWKETR 253
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 159 bits (387), Expect = 2e-39
Identities = 71/86 (82%), Positives = 81/86 (94%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 434 ATAIRGAIILAKLSVLPVRRGYWGNR 511
ATAIRGAIILAKLSV+PVRRGYWGN+
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 122 bits (293), Expect = 4e-28
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +1
Query: 502 G*QIGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 681
G +IGKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 223
Query: 682 GTLGNFXXXXXXXXXXXXXXLTPDLWRISR 771
TLGNF LTP+ W+ +R
Sbjct: 224 KTLGNFVKATFDCLQKTYGFLTPEFWKETR 253
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +2
Query: 302 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 481
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 482 PV 487
V
Sbjct: 209 QV 210
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 517 KPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 696
K T P + G G+ V L P GTG+++ + +L+MAGV++ GS L N
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNN 273
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 348 PARVCFCTGMILRTSSFRDGPRKKSMISNSLMVKKTSK 235
P R FC+G+ +S + PR+KS +S+ L KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 736 HMSWQWQRMWL*QNFPRCQLNHELTCSNPVHQPSEE-AS*ELAQTQYQYHEDQESA 572
+M+ Q Q+ L Q + QL H+ P+ QPS++ A Q Q Q HE + A
Sbjct: 920 YMNQQQQQQQLQQQPQQQQLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQA 975
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -3
Query: 519 LSYLLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 340
L LL Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 339 VCFCTGMILRTSSFR 295
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -3
Query: 138 HGRDH----DRVHEDRHGLYLHRVIRNRRENRHVH 46
HGRDH DR H HG + HR R R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 144 HDHGRDHDRVHEDRHGLYLH 85
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 895
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 508 QIGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKL 630
+ G TV SV +RL PDP+G PV K L
Sbjct: 47 ETGNTTTVTYAEGNSTSSVPIRLFPDPQGRQCYKLPVRKDL 87
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 368 AFVAIGDNNGHIGLGVKCSKE 430
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 551 LPVTLQGTVCGFPICYPSNLF 489
LP+ LQG + GF + PSN++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 132 RDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 25
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 132 RDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 25
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 132 RDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 25
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -3
Query: 519 LSYLLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 340
L LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 339 VCF 331
CF
Sbjct: 222 TCF 224
>At2g37930.1 68415.m04656 expressed protein
Length = 467
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 188 TRPSCSRRKNRQTREHLLVFFTI-KEFEIIDFFLGPSLNDEVLKIM 322
TRP +K +R H L+ FT+ K + F +G + N+ + M
Sbjct: 196 TRPPTKEKKQSSSRVHALLQFTLRKGINLFQFVVGDNSNNVLAATM 241
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 523 HTVPCKVTGKCGSVTVRL 576
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,926,230
Number of Sequences: 28952
Number of extensions: 400447
Number of successful extensions: 1103
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -