Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0417
         (765 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BM88 Cluster: Chromosome undetermined scaffold_116, w...    38   0.36 
UniRef50_Q8ILC4 Cluster: Putative uncharacterized protein; n=1; ...    35   2.5  
UniRef50_Q0N482 Cluster: DNA binding protein; n=1; Clanis biline...    33   7.8  
UniRef50_Q4FRY3 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  

>UniRef50_A0BM88 Cluster: Chromosome undetermined scaffold_116,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_116,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 590

 Score = 37.5 bits (83), Expect = 0.36
 Identities = 29/103 (28%), Positives = 52/103 (50%)
 Frame = -1

Query: 741 NAKLYRKKLSSLWHSADLQPNLNQKVV*SGTNQTITVKGKYNKLFFSKKNIIVTYKLKRK 562
           N ++Y  +LS +  +  L   LN+ +     +Q   + G  N   +S ++ I  YK    
Sbjct: 385 NCQVYFTQLSKMRENEKLDL-LNEIIYSHSKSQNKRIYG--NDQLYSVQSQIGRYKY--- 438

Query: 561 IAY*ISTKNKQIKVSTKKIPHFVTVTFSFSYETNLTIKTIPNE 433
           I +  +T N+ +KV  K + H V V F ++ ++N  I+ +PNE
Sbjct: 439 ILFENNTLNQTLKVFFKLMKHLVIVNFPYNDQSNQLIQVLPNE 481


>UniRef50_Q8ILC4 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1518

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 25/81 (30%), Positives = 36/81 (44%)
 Frame = -1

Query: 615  KLFFSKKNIIVTYKLKRKIAY*ISTKNKQIKVSTKKIPHFVTVTFSFSYETNLTIKTIPN 436
            KLF SKK  I+ YK  + +    S      KV    I + V      + +    IK    
Sbjct: 892  KLFTSKKLKIIIYKHIKTLQDNFSFFKDFKKVEDVNIMNIVQTFVFINKKIKNKIKNKIK 951

Query: 435  EI*SQRKKLHLHILFRLYLNV 373
             I + +  LHLHIL+ L +N+
Sbjct: 952  NIINNKSSLHLHILYNLSINI 972


>UniRef50_Q0N482 Cluster: DNA binding protein; n=1; Clanis bilineata
           nucleopolyhedrosis virus|Rep: DNA binding protein -
           Clanis bilineata nucleopolyhedrosis virus
          Length = 232

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 8   GVCDFNSQVFTFTLNHYKILHITLHYSLRYVIFFHL 115
           G+    S V   TLN+ KIL  T  +S++ VIFFH+
Sbjct: 196 GIKQSKSAVEMITLNNKKILEKTYSFSIKPVIFFHI 231


>UniRef50_Q4FRY3 Cluster: Putative uncharacterized protein; n=1;
           Psychrobacter arcticus|Rep: Putative uncharacterized
           protein - Psychrobacter arcticum
          Length = 498

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 17  DFNSQVFTFTLNHYKILHITLHYSLRYVIFF 109
           +F S+V  F LNH +++ +TLHY      FF
Sbjct: 158 EFTSEVLDFLLNHCEVVQVTLHYLSEAFQFF 188


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,377,459
Number of Sequences: 1657284
Number of extensions: 11894384
Number of successful extensions: 23439
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23413
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)