Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0417
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             31   0.77 
SB_39649| Best HMM Match : DUF81 (HMM E-Value=3.3)                     28   9.5  

>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +2

Query: 26  SQVFTFTLNHYKILHITLHYSLRYVIFFHLCLIQY-LLFFDHIP---IKSWTFELR-VNF 190
           S +FT+ ++ Y I + T+H+S  +    HL  I Y  + F H+    I  +    R ++F
Sbjct: 208 SPLFTYLIHLYPISYRTIHFSPLFTYLIHLYPISYRTIHFSHLVTYLIHLYPISYRTIHF 267

Query: 191 NRIFLLQSNL 220
           + +F  + NL
Sbjct: 268 SPLFTYRINL 277



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 26  SQVFTFTLNHYKILHITLHYSLRYVIFFHLCLIQY 130
           S +FT+ +N Y I + T+H+S  +    HL  I Y
Sbjct: 268 SPLFTYRINLYPISYRTIHFSPLFTYLIHLYPISY 302



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 26  SQVFTFTLNHYKILHITLHYSLRYVIFFHLCLIQY 130
           S +FT+ +N Y I + T+H+S  +    HL  I Y
Sbjct: 368 SPLFTYLINLYPISYRTIHFSPLFTYLIHLYPISY 402



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 26  SQVFTFTLNHYKILHITLHYSLRYVIFFHLCLIQY 130
           S +FT+ ++ Y I + T+H+S  +    HL  I Y
Sbjct: 388 SPLFTYLIHLYPISYRTIHFSPLFTYLIHLYPISY 422


>SB_39649| Best HMM Match : DUF81 (HMM E-Value=3.3)
          Length = 681

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 551 Q*AILRFSL*VTMMFFFEKKSLLYFPLTVMVW 646
           Q AI+ F L V +   F++ +++YFPL V+VW
Sbjct: 542 QEAIVYFPLIVLVWGIFQE-AIVYFPLIVLVW 572


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,480,841
Number of Sequences: 59808
Number of extensions: 362413
Number of successful extensions: 587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)