Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0417
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U80029-15|AAB37594.2|  642|Caenorhabditis elegans Hypothetical p...    28   8.4  

>Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical
           protein F40D4.8 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -1

Query: 591 IIVTYKLK--RKIAY*ISTKNKQIKVSTKKIPHFVTVTFSFS 472
           I++ Y++K  RK+A   S +N   K  + K+  FVT+TF  S
Sbjct: 231 IVLLYEMKKTRKVATSRSFQNSNSKDRSTKLVTFVTITFLLS 272


>U80029-15|AAB37594.2|  642|Caenorhabditis elegans Hypothetical
           protein T20D4.3 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = -1

Query: 648 NQTITVKGKYNKLFFSKKNIIVTYKLKRKIAY*ISTKNKQIKVSTKKIPHFVTVTFSFSY 469
           N+++T++    KL+           LK  +    S ++  I+V  K  P +   T +   
Sbjct: 365 NESLTIEQYVGKLYIEITLHRPIKVLKTDVKGRKSVESFSIEVYWKDEPSYPLTTTTAVT 424

Query: 468 ETNLTIKTIPNEI*SQRKKLHL 403
           E N T KTI     S+  KLHL
Sbjct: 425 EMNTTPKTIATSPTSKDPKLHL 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,450,228
Number of Sequences: 27780
Number of extensions: 308832
Number of successful extensions: 603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)