Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0417
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.4  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   5.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.2  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   7.2  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = -1

Query: 495 VTVTFSFSYETNLTIKTIPNEI*SQRKKLHLHILFRLYLNV 373
           V     F YE+N+  + +P+ +      L   + F +Y  +
Sbjct: 384 VRKVLGFGYESNVKYQVVPSALQMWSTSLRDPVFFSIYKTI 424


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = -1

Query: 495 VTVTFSFSYETNLTIKTIPNEI*SQRKKLHLHILFRLYLNV 373
           V     F YE+N+  + +P+ +      L   + F +Y  +
Sbjct: 384 VRKVLGFGYESNVKYQVVPSALQMWSTSLRDPVFFSIYKTI 424


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = -1

Query: 495 VTVTFSFSYETNLTIKTIPNEI*SQRKKLHLHILFRLYLNV 373
           V     F YE+N+  + +P+ +      L   + F +Y  +
Sbjct: 10  VRKVLGFGYESNVKYQVVPSALQMWSTSLRDPVFFSIYKTI 50


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 636 TVKGKYNKLFFSKKNIIVTYKLKRKIAY*ISTKNKQIKV 520
           TVK K N ++ S   ++   KLK      IS +  ++KV
Sbjct: 238 TVKKKVNYVYRSVDQVLEDGKLKPNKKVRISNEMSKVKV 276


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 371 STFKYNLNNICK 406
           + +KYN NN CK
Sbjct: 94  NNYKYNYNNNCK 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,215
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)