Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0417
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10572.1 68416.m01269 3-phosphoinositide-dependent protein ki...    32   0.36 
At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2), puta...    30   1.9  
At1g08135.1 68414.m00894 cation/hydrogen exchanger (CHX6b) Note:...    28   5.9  
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)       28   7.8  
At1g26799.1 68414.m03265 expressed protein                             28   7.8  

>At3g10572.1 68416.m01269 3-phosphoinositide-dependent protein
           kinase-1, putative annotation temporarily based on
           supporting cDNA gi|17065215|gb|AY062684.1|
          Length = 333

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = -1

Query: 615 KLFFSKKNIIVTYKLKRKIAY*ISTKNKQIKVSTKKIPHFVTVTFSFSYETNLTIKTIPN 436
           K+  S   +I+ Y LKRK A  I    +Q++ + K I  F  + FS+       I++IP+
Sbjct: 271 KVAVSLVGLIICYALKRKRAALIRIIRRQMESTRKAIVDFWKLAFSYQVNPLAAIQSIPS 330


>At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2),
           putative similar to Swiss-Prot:P33331 nuclear transport
           factor 2 (NTF-2) (Nuclear transport factor P10)
           [Saccharomyces cerevisiae]
          Length = 127

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 64  ITHYITLFFEVRNILSSLFNPISLI 138
           + HY  LF   R+ LSSL+NP SL+
Sbjct: 17  VNHYYHLFDNDRSSLSSLYNPTSLL 41


>At1g08135.1 68414.m00894 cation/hydrogen exchanger (CHX6b) Note:
           CHX6a and CHX6b were originally 1 gene but were split
           pased on alignments with other family members; may be a
           pseudogene and requires futher investigation; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 824

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 61  NITHYITLFFEVRNILSSLFNPISLILRSH 150
           NITH++ LF +V  +LS +F  + +    H
Sbjct: 114 NITHFLFLFLKVGAVLSEMFGSMQIPCLKH 143


>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 
          Length = 593

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 272 FIRVWKRHHCSFV 234
           F+R +K HHCSF+
Sbjct: 437 FVRAYKEHHCSFI 449


>At1g26799.1 68414.m03265 expressed protein
          Length = 151

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -1

Query: 612 LFFSKKNIIVTYKLKRKIAY*ISTKNKQIKVSTKKIPHFVTVTFSFSYETNLTIKTIPN 436
           L FS K++++   L  +    +   NK+  +  +K+P  +  +F F +  NL   T  N
Sbjct: 36  LLFSPKHVVIYNTLTSRATLVVHCVNKEKDLGIQKLP--IGASFDFRFRVNLRKTTTYN 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,922,889
Number of Sequences: 28952
Number of extensions: 257386
Number of successful extensions: 516
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)