Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0416
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   2.2  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    27   2.2  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.9  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   5.1  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   5.1  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    26   6.8  

>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -2

Query: 521 KVTSRTLKAFLSPVLNF*QKNILSQDIEPHSTLAPSLYPACACYIYHLRAPICRYLRSLK 342
           K  + T K  LS V    +KN++ +DI+P + L        A  +Y +   + +Y R  K
Sbjct: 106 KTVAMTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSRNANMVYMVDFGMAKYYRDPK 165

Query: 341 IELQV 327
            +  +
Sbjct: 166 TKQHI 170


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 410 KVKVRVYYEA-LCPDSKYFFVKNLAPVTEKLSEF 508
           KVK   +Y+A L    K    K  +PV +KLS+F
Sbjct: 162 KVKSAAFYQAKLAKQKKIASAKEASPVNQKLSQF 195


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 156 YFEKICY-HFIDTSQWVIYILTNSMHDCQQLLIFFLSYFWYDNIHHYEMLSP 4
           +F   CY H I    W++ I+ ++      L++FF+SY +   I  Y+ ++P
Sbjct: 432 WFAWTCYPHHI---HWIVPIIASAFFGFSLLIVFFVSYNYI--IDSYQHMAP 478


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -1

Query: 156 YFEKICYHFIDTSQWVIYILTNSMHDCQQLLIFFLSY 46
           +F   CY +     W++ ++++       L +FF+SY
Sbjct: 425 WFAWTCYPYHPYVHWIVPLISSIFFGWSLLFVFFVSY 461


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 480 HR*QKSFQSSRCDFSSLWQSDDQRNQRKV 566
           H  +KSFQ S  DF +  Q DD   +R++
Sbjct: 630 HNLKKSFQFSLWDFFNELQPDDDSEEREI 658


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 19/80 (23%), Positives = 37/80 (46%)
 Frame = +2

Query: 242 ILSLHRYRIIVLVLLSLIMWQFFRLIPDKPVALFSESVDTDILELEDDKYNKHKQDKVKV 421
           + SL R R ++  L+      F ++  D  +      ++ ++LE+ + K    K D ++ 
Sbjct: 303 LFSLIRERSLLDYLIPYSALPFSKIAVDFHID--ENFIEKNLLEIIEAKKLNGKVDSLQK 360

Query: 422 RVYYEALCPDSKYFFVKNLA 481
           RVY E       +  +KN+A
Sbjct: 361 RVYIEPSSEPENFEDIKNIA 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,266
Number of Sequences: 5004
Number of extensions: 54687
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)