Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0416
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    58   6e-09
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278...    48   8e-06
03_02_0673 - 10328994-10329281                                         31   1.0  
02_04_0170 + 20576149-20576889                                         29   5.4  
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244...    28   7.1  

>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
 Frame = +1

Query: 508 LDVTLVPYGKATTKEINGKYIFSCQHGEEECYANKIHSCSIEAVTNMTKAVKFTTCMITD 687
           +D++LVPYG A  K+  GK     +HG EEC+ N + +C+I+A  ++    +F  C + D
Sbjct: 65  VDLSLVPYGNARVKD--GKISCQVEHGSEECFLNTVEACAIDAWPDLRVHFRFIYC-VED 121

Query: 688 --NNDADEALQRCSKSMNIDSDPISNC 762
              N      + C   +N+D  P+++C
Sbjct: 122 LVVNHKQREWESCFGKLNLDPKPVTDC 148



 Score = 33.1 bits (72), Expect = 0.25
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +2

Query: 401 KQDKVKVRVYYEALCPDSKYFFVKNLAPV 487
           K  KV V +YYE+LCP S  F V +LA V
Sbjct: 28  KGGKVDVALYYESLCPYSAMFVVGSLAKV 56


>01_06_1209 +
           35427160-35427318,35427436-35427501,35427737-35427877,
           35428342-35428434,35428530-35428646,35428890-35429054
          Length = 246

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
 Frame = +1

Query: 463 FCQKFSTGD-RKAFR-----VLDVTLVPYGKATTKEINGKYIFSCQHGEEECYANKIHSC 624
           FC  F   D  + FR     V+D+ LVP+G       +G    +CQHGEEEC  N I +C
Sbjct: 11  FCSGFVVNDLARIFRDGLSPVVDLRLVPFGNGRVSP-DGS--ITCQHGEEECQLNAIEAC 67

Query: 625 SIEAVTNMTKAVKFTTCM-ITDNNDADEALQRCSKSMNIDSDPISNC 762
            I    +  +   F  C+          A Q C +   + S P+ +C
Sbjct: 68  VIRLWPDAEQHFPFINCIEHLALTQKWNAWQSCFQETGLASQPVMDC 114


>03_02_0673 - 10328994-10329281
          Length = 95

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 407 DKVKVRVYYEALCPDSKYFFVKNLAPVTE 493
           +KV + +YYE LCP    F V +LA + E
Sbjct: 37  EKVPLALYYETLCPYCSRFIVNHLAGIFE 65


>02_04_0170 + 20576149-20576889
          Length = 246

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 212 VRKTSMNENGILSLHRYRIIVLVLLSLIMWQFFRLIPD-KPVALFSES 352
           +R+T +      +L RY I  +  LS+ M+ F+ ++    P+ LF +S
Sbjct: 171 LRRTGVLAMASAALKRYNITAVTSLSMFMFMFYTIVSTISPLRLFRDS 218


>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
            31825391-31825549,31825965-31826093,31826257-31826460,
            31827200-31827412,31827547-31830912,31830999-31831150,
            31831912-31832407,31832646-31833456,31833537-31834728,
            31834856-31834922
          Length = 2593

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 509  RTLKAFLSPVLNF*QKNILSQDIEPHSTLAPSLYPACACYIY 384
            RTL  F+SPV      N +    E  S+ +P+  PA  C +Y
Sbjct: 1339 RTLAKFVSPVRLLELANWMFSTFEGFSSSSPAYAPAAFCCLY 1380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,989,059
Number of Sequences: 37544
Number of extensions: 277551
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)