Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0416
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   3e-13
SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)                  50   3e-06
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         30   1.8  
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)                   29   5.4  
SB_38425| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)                28   9.5  

>SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
 Frame = +1

Query: 490 RKAFRVLDVTLVPYGKATTKEINGKYIFSCQHGEEECYANKIHSCSIEAVTNMTKAVKFT 669
           +K   ++D+TLVPYG A       K++F+CQHG+ EC  N I  C+I  + N++    F 
Sbjct: 53  QKVGSIMDITLVPYGNAQEYRYGNKWVFNCQHGQGECEGNIIEVCAINVLKNISAYFPFI 112

Query: 670 TC---MITDNNDADEALQRCSKSMNIDSDPISNC 762
            C    I+  N +  A Q C+K + ID  PI  C
Sbjct: 113 HCFEQFISSYNPSSTA-QYCAKQLGIDYAPIEKC 145


>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
          Length = 311

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 24/103 (23%), Positives = 46/103 (44%)
 Frame = +1

Query: 454 KIFFCQKFSTGDRKAFRVLDVTLVPYGKATTKEINGKYIFSCQHGEEECYANKIHSCSIE 633
           +    Q + T + K   +LD+++VP+G     +    + + C +G EEC  N I +C++ 
Sbjct: 43  RFMVAQLYPTSN-KIPNILDISMVPFGDGKEIKAKSGFQYYCTNGAEECLENLIQACAVA 101

Query: 634 AVTNMTKAVKFTTCMITDNNDADEALQRCSKSMNIDSDPISNC 762
              N      F  C+   +   D+  + CS  +  D + +  C
Sbjct: 102 TENNPEILTSFVGCLSYYDGSVDKIAKYCSNQIK-DYEKVEYC 143



 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 401 KQDKVKVRVYYEALCPDSKYFFVKNLAPVTEKL 499
           K +KVK+ VYY +  P+ + F V  L P + K+
Sbjct: 24  KAEKVKLAVYYNSKNPEFRRFMVAQLYPTSNKI 56


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 661 KFTTCMITDNNDADEALQRCSKSMNIDS---DPISNCQ 765
           +F  CM   N DA+E +QR  K + I+S   D + NC+
Sbjct: 163 EFLHCMTKYNQDAEEQIQRFRKVLPINSFWTDQVKNCK 200


>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
          Length = 841

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/55 (23%), Positives = 22/55 (40%)
 Frame = +1

Query: 577 CQHGEEECYANKIHSCSIEAVTNMTKAVKFTTCMITDNNDADEALQRCSKSMNID 741
           C+  + +C  +  + C  E   +  K VK+  C    N+   E    C K +  D
Sbjct: 163 CKEVKYDCCKDLTYDCCKEVQNDCCKEVKYDCCKDLTNDCCKEVQNDCCKEVKYD 217


>SB_38425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 407 PACACYIYHLRAPICRYLRS 348
           P+CA YIY L + +C Y+ S
Sbjct: 84  PSCAYYIYSLPSRLCLYIHS 103


>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
          Length = 594

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 460 FFCQKFSTGDRKAFRVLDVTLVPYGKATTKEINGKYIFSCQHGEEE 597
           F C       R+ FR    T++   +AT K         CQH +EE
Sbjct: 116 FMCDFCIESHRRLFRTRQHTIISLQEATAKSTTSCKSHYCQHHKEE 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,746,887
Number of Sequences: 59808
Number of extensions: 363240
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)