Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0415
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0264 + 2030080-2031270                                           65   5e-11
01_03_0090 - 12347165-12348349                                         62   3e-10
01_02_0051 - 10655867-10657057                                         62   3e-10
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504...    28   6.7  
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974...    28   8.8  

>05_01_0264 + 2030080-2031270
          Length = 396

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
 Frame = +3

Query: 3   EPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRA---PIYQRTSTYGHFGR 173
           EPLS+ V  YGT     +++L IV++NFD RPG I+  L+L+      Y +T+ YGHFGR
Sbjct: 317 EPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGR 376

Query: 174 --AGFPWESPKPL 206
               F WE  KPL
Sbjct: 377 DDPDFTWEVVKPL 389


>01_03_0090 - 12347165-12348349
          Length = 394

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
 Frame = +3

Query: 3   EPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLR--APIYQRTSTYGHFGR- 173
           EPLS+ V  YGT     +++L IV++NFD RPG +   L+L+     + +T+ YGHFGR 
Sbjct: 316 EPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGNRFIKTAAYGHFGRE 375

Query: 174 -AGFPWESPKPLIVE 215
              F WE  KPL  E
Sbjct: 376 DPDFTWEVVKPLKYE 390


>01_02_0051 - 10655867-10657057
          Length = 396

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
 Frame = +3

Query: 3   EPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRA---PIYQRTSTYGHFGR 173
           EPLS+ V  YGT     +++L IV +NFD RPG I+  L+L       Y +T+ YGHFGR
Sbjct: 317 EPLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGNGRYLKTAAYGHFGR 376

Query: 174 --AGFPWESPKPL 206
               F WE  KPL
Sbjct: 377 EDPDFTWEVVKPL 389


>06_01_0692 -
           5047162-5047441,5047602-5047726,5048257-5048327,
           5048453-5048834,5049389-5050126
          Length = 531

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
 Frame = +1

Query: 85  SIYDRAKSSKS*TSE---HQFIREQVPMDTL 168
           +I DR++SSKS  S+   HQF R+Q+P D +
Sbjct: 59  TILDRSESSKSNNSDDEAHQFWRKQLPDDII 89


>09_06_0061 +
           20596360-20596618,20597039-20597158,20597329-20597462,
           20597578-20597730,20597816-20597927,20598022-20598352,
           20598524-20598737,20598842-20598931,20599669-20599924,
           20600029-20600141,20600733-20600831,20600915-20600980,
           20601018-20601167,20601278-20601368,20601710-20601749,
           20603888-20605247,20605478-20605507,20605834-20605885,
           20606264-20606397,20606513-20606665,20607089-20607202
          Length = 1356

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 85  SIYDRAKSSKS*TSEHQFIREQVPMDT 165
           S+YD     +  TS +QF++E++PM+T
Sbjct: 217 SLYDYKNPRELSTSHNQFLKEKLPMNT 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,357,823
Number of Sequences: 37544
Number of extensions: 363775
Number of successful extensions: 740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)