Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0415
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   1e-22
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   3e-20
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_20110| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       31   1.3  
SB_53563| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                30   2.2  
SB_33413| Best HMM Match : DUF81 (HMM E-Value=0.31)                    29   5.2  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            28   9.0  

>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  103 bits (247), Expect = 1e-22
 Identities = 44/68 (64%), Positives = 57/68 (83%)
 Frame = +3

Query: 3   EPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIYQRTSTYGHFGRAGF 182
           +PLS+TVF YGTS K++ +LL IV+ NFDLRPGKIVKEL+L+ P+YQ++  YGHF + GF
Sbjct: 339 QPLSVTVFSYGTSKKSEDELLKIVRDNFDLRPGKIVKELDLKKPVYQKSCVYGHF-KPGF 397

Query: 183 PWESPKPL 206
            WE+PKPL
Sbjct: 398 TWETPKPL 405


>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 41/68 (60%), Positives = 54/68 (79%)
 Frame = +3

Query: 3   EPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIYQRTSTYGHFGRAGF 182
           EPLSI+VF YG+ + T +QLL +++ NFDLRPG I+++LNL  PIY+ TST+GHF + GF
Sbjct: 360 EPLSISVFSYGSGNYTDKQLLGVIKDNFDLRPGVIIRDLNLLRPIYKATSTFGHF-KPGF 418

Query: 183 PWESPKPL 206
           PWE PK L
Sbjct: 419 PWEEPKKL 426


>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 21/37 (56%), Positives = 31/37 (83%)
 Frame = +3

Query: 3   EPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVK 113
           EPLSI+VF YGT ++ +++LL +++ NFDLRPG IV+
Sbjct: 270 EPLSISVFTYGTGYRPEEELLEVIKHNFDLRPGVIVR 306


>SB_20110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 90  LRPGKIVKELNLRAPIYQRTSTYGHFGR 173
           +RP  I + L LR+P+Y  T+ YGH GR
Sbjct: 1   MRPAAIERRLKLRSPMYSETAAYGHMGR 28


>SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 421

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = -3

Query: 462 TAPR---FLLCFKLKNTYLITMNLVNATVIRFVWYHSSIGEVLVTL*SKERHRRRSALAT 292
           TAPR    +L   L    ++TM ++ A ++R +W    IGEV+ +  SK    R+  +  
Sbjct: 176 TAPRDYTVVLFVMLYAVPMLTMAVLYAIIVRKLWRRRRIGEVIPSASSKNEVSRKKVIKM 235

Query: 291 MTHIHKCLLYTDEYL 247
           +  I   +L+T  +L
Sbjct: 236 L--ITVIMLFTFSWL 248


>SB_53563| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 168

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 39  SHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIYQRTSTYGHFGRAGFPWES 194
           +H   Q L+        LR G   KE     P YQ  + YG   R+GFP+ S
Sbjct: 9   THPAAQTLVQASGALKCLRVGHWAKECRSAWPGYQSYAGYGFQNRSGFPYSS 60


>SB_33413| Best HMM Match : DUF81 (HMM E-Value=0.31)
          Length = 455

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = -1

Query: 335 YSLKRDTGDAAPSLQ*HTYISVYYILMNIYIVLMLRFCKSFYNQRLGTLPGESCPSKVSI 156
           ++  + T    PS +   ++ ++Y+ + + +V++L FC   Y      LP     ++ SI
Sbjct: 230 HNKSQKTNQTLPSQELSLHMILHYMYLQLGMVILLLFCVIVYFPNKPKLPPSHSKAQKSI 289

Query: 155 G 153
           G
Sbjct: 290 G 290


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -3

Query: 726 VVYSTKNS*HLHHKAHNEEHSRLSAVH*H*NKINVHLQLLNHRIH*RKSEAVYKII 559
           V+Y   +  H HH  H+ +H+     H H +  + H    +H  H   +  +   I
Sbjct: 205 VIYRRHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHHYHHHHHHHNNNTIITTI 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,392,801
Number of Sequences: 59808
Number of extensions: 477886
Number of successful extensions: 1177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)