Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0415
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.9  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 567 YTLPRIFFNEFYDSIIASVR 626
           Y +P IF   FY  +++S+R
Sbjct: 229 YVIPLIFIILFYSRLLSSIR 248


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 567 YTLPRIFFNEFYDSIIASVR 626
           Y +P IF   FY  +++S+R
Sbjct: 229 YVIPLIFIILFYSRLLSSIR 248


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 275 SVYYILMNIYIVLMLRFCKSFYNQRLGTLPGE 180
           +++Y+L+++ I L  R C + +N R    P E
Sbjct: 122 ALFYLLVSLRIDLPWRTCGNPWNTRYCLTPTE 153


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 275 SVYYILMNIYIVLMLRFCKSFYNQRLGTLPGE 180
           +++Y+L+++ I L  R C + +N R    P E
Sbjct: 175 ALFYLLVSLRIDLPWRTCGNPWNTRYCLTPTE 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,506
Number of Sequences: 438
Number of extensions: 4552
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)