Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0415
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati...    62   5e-10
At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2...    60   1e-09
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1...    55   6e-08
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1...    55   6e-08
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati...    54   1e-07
At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5...    30   1.4  
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg...    27   9.8  

>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 2 (Methionine
           adenosyltransferase 2, AdoMet synthetase 2)
           [Catharanthus roseus] SWISS-PROT:Q96552
          Length = 393

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
 Frame = +3

Query: 3   EPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRA---PIYQRTSTYGHFGR 173
           EPLS+ V  YGT     +++L IV+++FD RPG I   L+L+      + +T+ YGHFGR
Sbjct: 314 EPLSVFVDSYGTGKIPDKEILEIVKESFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGR 373

Query: 174 --AGFPWESPKPL 206
             A F WE  KPL
Sbjct: 374 DDADFTWEVVKPL 386


>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
           identical to S-adenosylmethionine synthetase 2
           (Methionine adenosyltransferase 2, AdoMet synthetase 2)
           [Arabidopsis thaliana] SWISS-PROT:P17562
          Length = 393

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
 Frame = +3

Query: 3   EPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRA---PIYQRTSTYGHFGR 173
           EPLS+ V  YGT     +++L IV++ FD RPG +   L+L+      +Q+T+ YGHFGR
Sbjct: 314 EPLSVFVDTYGTGLIPDKEILKIVKETFDFRPGMMTINLDLKRGGNGRFQKTAAYGHFGR 373

Query: 174 --AGFPWESPKPL 206
               F WE  KPL
Sbjct: 374 DDPDFTWEVVKPL 386


>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
 Frame = +3

Query: 3   EPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRA---PIYQRTSTYGHFGR 173
           EPLS+ V  Y T     +++L IV+++FD RPG +   L+L+      + +T+ YGHFGR
Sbjct: 314 EPLSVFVDTYETGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGR 373

Query: 174 --AGFPWESPKPL 206
               F WE  KPL
Sbjct: 374 DDPDFTWEVVKPL 386


>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
 Frame = +3

Query: 3   EPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRA---PIYQRTSTYGHFGR 173
           EPLS+ V  Y T     +++L IV+++FD RPG +   L+L+      + +T+ YGHFGR
Sbjct: 314 EPLSVFVDTYETGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGR 373

Query: 174 --AGFPWESPKPL 206
               F WE  KPL
Sbjct: 374 DDPDFTWEVVKPL 386


>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 3 (Methionine
           adenosyltransferase 3, AdoMet synthetase 3)
           [Lycopersicon esculentum] SWISS-PROT:P43282
          Length = 390

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
 Frame = +3

Query: 3   EPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRAP---IYQRTSTYGHFGR 173
           EPLS+ V  Y T     + +L ++++ FD RPG +   L+L+      +Q+T+ YGHFGR
Sbjct: 314 EPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGR 373

Query: 174 --AGFPWESPKPL 206
               F WE  KPL
Sbjct: 374 DDPDFTWEVVKPL 386


>At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5)
           contains Pfam profile: PF00249 myb-like DNA binding
           domain; identical to cDNA putative c-myb-like
           transcription factor MYB3R-5 (MYB3R5)  GI:15375300
          Length = 548

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 280 YVCHCSEGAASPVSLFRL*CD 342
           Y C CS GAASPVSL    C+
Sbjct: 382 YECGCSPGAASPVSLMTTPCN 402


>At1g78700.1 68414.m09173 brassinosteroid signalling positive
           regulator-related contains similarity to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 325

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 330 SKERHRRRSALATMTHIHKCLLYTDEY-LHCSNAQVLQVILQSAAW 196
           +K R RRR A+A        +    E   HC N +VL+ +   A W
Sbjct: 16  NKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGW 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,281,480
Number of Sequences: 28952
Number of extensions: 311029
Number of successful extensions: 624
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)