Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0414
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.0  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   2.6  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    26   4.5  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   6.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   6.0  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   7.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = -1

Query: 298  HRGPAPRHSEKHSASKPTELSACCRERSETPRHRNKPSRPVWSRRSPHHFH 146
            H   +P  +    AS     ++  R +S+  RH    S    S+   HH H
Sbjct: 1260 HSNASPSPTSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHH 1310


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -1

Query: 322 REQGHQDHHRGPAPRHSE-KHSASKPTELSACCRERSETPRHRNKPSRPVWSRRSP 158
           RE  H   HR    RH E KH     +E  +  RE  +  RH      P+  ++ P
Sbjct: 20  RETNHSRRHRHHHSRHRESKHGRHDRSERPS-SREAGDRSRHERFSKEPLEVKKLP 74


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 157 VDSVETKQVEKVYSGDGASLSAPGSKRSALSASTPSVSRCAWAPGLCGGPDV 312
           ++SV    + K+Y   GA    PG+   A   + P       APG   GP+V
Sbjct: 597 LESVANPIMAKIYQAGGAPGGMPGAAPGAAPGAAPGA-----APGGDNGPEV 643


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 178 QVEKVYSGDGASLSAPGSKRSALSASTPSVS 270
           +++ V+   G+S+S+P +  S+ S+ST SVS
Sbjct: 62  KIKDVFLMQGSSISSPDTYDSSSSSSTTSVS 92


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 625 HHVVVHNSLPTYNCVLGEINLELNFNGVLVLALQ 524
           H  V+ NS+  ++  +    +ELN++ V V  L+
Sbjct: 239 HESVLRNSMDDFHTAISSSEIELNYSNVSVSTLK 272


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -1

Query: 307 QDHHRGPAPRHSEKHSASKPTELSACCRERSETPRHRNKPSRPVWSRRSPH 155
           ++HH+GP  +   K    K        +E  + P+ ++   RP  + +S H
Sbjct: 389 KEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHN-ERPEQNMQSSH 438


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 469 SWRLSALLAKELELDHSRALSKSRLSSW 386
           SW LS ++ KEL++       +  L SW
Sbjct: 694 SWSLSEIVLKELDIKRQDINQEKALQSW 721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,428
Number of Sequences: 5004
Number of extensions: 40989
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)