Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0414
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071...    31   0.67 
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993...    29   3.5  
12_02_1275 - 27482784-27483272                                         28   6.2  
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442...    28   6.2  
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295...    28   6.2  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    28   8.2  
03_01_0020 + 180963-181346,181432-181994,183000-183822                 28   8.2  

>04_03_0665 -
           18506221-18506271,18506331-18506401,18507097-18507169,
           18507476-18507805
          Length = 174

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 147 WKWCGLRRDQTGREG 191
           W WCGLRR + GR G
Sbjct: 65  WMWCGLRRSKAGRRG 79


>03_06_0034 +
           31197846-31198417,31198562-31198987,31199074-31199386,
           31199510-31199560
          Length = 453

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 242 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 150
           ++RL+  ALR  PSP   F++ L    +TPF
Sbjct: 39  SQRLVYAALRSLPSPRALFASLLSQLSATPF 69


>12_02_1275 - 27482784-27483272
          Length = 162

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 144 QWKWCGLRRDQTGREG 191
           +W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159


>10_08_0106 +
           14842748-14843085,14843122-14843250,14844145-14844211,
           14847177-14847324,14847998-14848097,14848306-14848384,
           14848527-14848687,14848829-14848908,14849319-14849475,
           14849575-14849723,14849909-14850076,14850426-14850719,
           14851002-14851046,14851213-14851462,14851707-14851835,
           14852799-14853039,14853977-14854642
          Length = 1066

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -1

Query: 328 QSREQGHQDHHRGPAPRHSEKHSASKPTELSACCRERSETPRHRNKPSRP 179
           +SR     D    P P   ++HS   P   S   ++RS + R+ + P  P
Sbjct: 846 RSRSSQPADRSAPPPPASPDRHSRRSPHRSSGSGKKRSSSDRYDDLPLPP 895


>02_05_1044 +
           33728623-33728768,33728814-33728993,33729446-33729523,
           33729834-33729930,33730206-33730339,33730944-33731025,
           33731631-33731717,33731875-33731981,33732674-33732845,
           33733018-33733259,33733482-33733563,33733954-33734019,
           33734040-33734159,33734935-33735012,33735083-33735178,
           33735791-33735897,33736031-33736199,33736402-33736452,
           33736567-33736650,33736946-33737040,33737175-33737265,
           33737342-33737488,33737614-33737676
          Length = 857

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 477 LGHHGDSRRCWPKSWSLTIAGHLASRD 397
           L    D +  WP  W ++ AGH+++ D
Sbjct: 76  LQRRADCKDTWPGQWDISSAGHISAGD 102


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 304 DHHR-GPAPRHSEKHSASKPTELSACCRERSETPRHRNKPSRPVWSRR 164
           DH++ GP+   + K    KP       R+ + +PR R+ PSR V S R
Sbjct: 237 DHNKVGPSAEKATKQQPRKPASPQ---RKPAPSPRRRSPPSRRVESPR 281



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = -1

Query: 325 SREQGHQDHHRGPAP---RHSEKHSASKPTELSACCRERSETPRHRNKPSRPVWS 170
           SR  G     R P+P   R       S   +  +  R RS  PR R  P R +WS
Sbjct: 305 SRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPRRMWS 359


>03_01_0020 + 180963-181346,181432-181994,183000-183822
          Length = 589

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 645 TPGTRRYIMLLCTTASQRITVFSVR*ILNSILTGCLSLRS 526
           T G R   M+LC   ++R+T   V   L + LTG + L S
Sbjct: 45  TGGWRSAAMILCVELNERLTTLGVAVNLVTYLTGTMHLGS 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,448,509
Number of Sequences: 37544
Number of extensions: 333059
Number of successful extensions: 1129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)