Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0414
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.39 
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)               29   4.8  
SB_12076| Best HMM Match : CHCH (HMM E-Value=0.28)                     29   4.8  
SB_2064| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_16186| Best HMM Match : TENA_THI-4 (HMM E-Value=0.69)               28   6.3  
SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               28   6.3  
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -1

Query: 328 QSREQGHQDHHRGPAPRHSEKHSASKPTELSACCRERSETPRHRNKPSRPVWSRRSPHHF 149
           +SR +  +   R  +PR   +  +  P   S   R RS +PR R+  SR    RR     
Sbjct: 225 RSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRS 284

Query: 148 H 146
           H
Sbjct: 285 H 285



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
 Frame = -1

Query: 328 QSREQGHQD---HHRGPAP------RHSEKHSASKPTELSACCRERSETPRHRNKPSRPV 176
           +  E+ H++   HHR  +P      R   + S S      +  R RS +PR R +   P 
Sbjct: 182 EEEEEEHKESPVHHRSLSPEPRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPR 241

Query: 175 WSRR----SPHH 152
             RR    SPHH
Sbjct: 242 RRRRSRSPSPHH 253


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 343  TLRAVQSREQGHQDHHRGPAPRHSEKHSASKPTELSACCRERSETPRHRNKPS 185
            T+  V+  E+  +D  +GP  R  + H      E+    R+RS  P +R   S
Sbjct: 1092 TIALVERLEEVERDGRQGPDSRRRQTHERRGGKEVREAIRDRSSQPDYRRADS 1144


>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 156 CGLRRDQTGREGLFR*RGVSERSRQQALSSVGFDAECFSLCLGAG 290
           C +  + +GR    R + V + S    L   G D  C  +C+G G
Sbjct: 178 CEIFGNTSGRSRRVRGKRVQQNSTNNLLQCTGLDCPCERICVGQG 222


>SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)
          Length = 283

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 319 EQGHQDHHRGPAPRHSEKHSASKPTELSACCRERSETPR 203
           EQ H    +G  P++S+KH   KP   +    + ++T R
Sbjct: 93  EQEHVKTEKGVTPQNSQKHFEKKPKNFNKLPNKNNKTDR 131


>SB_12076| Best HMM Match : CHCH (HMM E-Value=0.28)
          Length = 115

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -1

Query: 319 EQGHQDHHRGPAPRHSEKHSASKPTELSACCRERSETPRHRNKPSRPVWSRRSPH 155
           +Q H+   R   P H       +P E+S C ++ +E  R   +P++     + PH
Sbjct: 56  QQPHE-MSRCTQPPHEMSRCTQQPNEMSRCTQQPNEMSRCTQQPNKMSRCTQQPH 109


>SB_2064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 319 EQGHQDHHRGPAPRHSEKHSASKPTELSACCRERSETPRH 200
           ++ H    R P P H  K +  + +E   CC+     P+H
Sbjct: 18  QKSHVKIRRFPPPNHEVKFNVLRSSEDECCCKHTFLFPKH 57


>SB_16186| Best HMM Match : TENA_THI-4 (HMM E-Value=0.69)
          Length = 418

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 232 KRSALSASTPSVSRCAWAPGLCGG 303
           +R ALS ++ S+    W  G CGG
Sbjct: 339 RRKALSTNSTSIENLKWTSGRCGG 362


>SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1258

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 277 HSEKHSASKPTELSACCRERSETPRHRNKPSRPVWSRRSP 158
           H+ KHS S+P   SA   ER+ +P +      P  S R P
Sbjct: 542 HAHKHSGSEPVNPSAYFPERALSPGNEYLAPLPKKSSRPP 581


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 157  VDSVETKQVEKVYSGDGASLSAPGSKRSALSASTPS 264
            VD ++TK   +V SGDG  +++ G   +  S ST S
Sbjct: 1734 VDHLQTKISSRVDSGDGTLVTSSGRSSTVPSTSTES 1769


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,614,605
Number of Sequences: 59808
Number of extensions: 380692
Number of successful extensions: 1217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)