Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0414
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    30   1.7  
At1g27060.1 68414.m03299 regulator of chromosome condensation (R...    29   2.2  
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ...    29   3.9  
At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam...    28   6.8  

>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
 Frame = -1

Query: 313 GHQDHHRGPAPRHSEKHSASKPTELSACCRERSETP-----RHR--NKPSRPVWSRRSPH 155
           GH  H R P P  +  H  S P  ++AC   R   P      HR    PS PV +     
Sbjct: 20  GH--HRRSPPPATTGHHHRSPPPAITACHHRRPPLPATTAGHHRQLRPPSIPVTTNTG-- 75

Query: 154 HFHC 143
           H HC
Sbjct: 76  HRHC 79


>At1g27060.1 68414.m03299 regulator of chromosome condensation
           (RCC1) family protein low similiarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 386

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 214 LSAPGSKRSALSASTPSVSRCAWAPGLCGGPDV 312
           +SA G   +A+SA     S   W  G CGGPDV
Sbjct: 211 ISANGDHSAAISADGQFFS---WGRGFCGGPDV 240


>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
          Length = 482

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 269 LAVPGRRASVVVLMSLLTALHRPEGDRRGC 358
           L   G + SV+  + LLT  H  EG RRGC
Sbjct: 137 LGSQGLKLSVMQDIDLLTRTHMEEGARRGC 166


>At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam
           NUDIX domain [PF00293]; very low similarity to Chain A
           and Chain B of Escherichia coli isopentenyl
           diphosphate:dimethylallyl diphosphate isomerase
           [gi:15826361] [gi:15826360]
          Length = 772

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 462 DSRRCWPKSWSLTIAGHLASRD 397
           D +  WP  W ++ AGH+++ D
Sbjct: 54  DDKDSWPGQWDISSAGHISAGD 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,266,969
Number of Sequences: 28952
Number of extensions: 240942
Number of successful extensions: 819
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)