Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0413
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    27   2.7  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   3.6  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    26   4.8  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   8.4  

>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 653 VSEINDLHHDLYYGEAEEHS 594
           ++  NDL HD+YYG+    S
Sbjct: 83  INSYNDLFHDVYYGDGRSMS 102


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 286 IVTDGFQCDVNYDKFSAIPWAVVEPLLLV 372
           +   GF    +  KF A+ WAV E +LLV
Sbjct: 160 VFNSGFSVSSSDVKFRAVQWAVGEAILLV 188


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 625 TFTMERLRNIRIGSGFLLY 569
           TFT + L NIR G+G L Y
Sbjct: 132 TFTFKPLHNIRSGAGLLAY 150


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 674 YIEEMRLVSEINDLHHDLYYGEAEEHSHRFGISLI*CSQIGHDNPQPNQINE 519
           Y EE R V  +    HD     A + + R+ I     S   HDN + N+INE
Sbjct: 30  YGEECRYVKRVK---HD--NRAAVQENERYPILYTPLSTSDHDNDEENEINE 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,108
Number of Sequences: 5004
Number of extensions: 73956
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)