Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0413
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    31   0.94 
10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986           31   1.2  
06_01_0076 - 622789-623689,623714-623931                               30   1.6  
12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794...    29   2.9  
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    29   3.8  
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489...    29   5.0  
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687...    28   6.6  

>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
            8511209-8511523,8511576-8511682,8512559-8512629,
            8512952-8513029,8513390-8513454,8514224-8514274,
            8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 78   LYIQSTIKLLLWVCVVNCVQ-FFQLETFSQWFYTLLTCAVESNYALYV 218
            L  QS  +  L  CV N ++ FFQ+   SQW+Y L  C + S +  Y+
Sbjct: 1031 LSFQSKWRTYLRSCVRNNLRTFFQVLVQSQWWYNLEGCLLHSPHLKYL 1078


>10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986
          Length = 700

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 540 RIVVSYLGA-LYKRNPEPMRMFLSLSIVKVVMQIIYFGYQPHFFDIFGNETYWFL 701
           R V+SYLG  LYK     + +       K  +   ++G+  HF  +FG  T + L
Sbjct: 224 RSVISYLGMDLYKLVEMELSLMYDFLYTKAAVIHTWYGFCIHFVSLFGTATTFLL 278


>06_01_0076 - 622789-623689,623714-623931
          Length = 372

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +1

Query: 340 PWAVVEP---LLLVLNLGTHGFYPFPGTFR 420
           PW V+     L+L L++G H  Y FPGTF+
Sbjct: 233 PWLVISGDMLLMLDLSVGIHHSYGFPGTFQ 262


>12_02_0580 +
           20776820-20777247,20777341-20778109,20779280-20779447,
           20779877-20780236
          Length = 574

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 171 RTIVRTFPIERTARNSPHTPTIIVLLLIVYT 79
           R  VR  P E T ++ PH PT+  L L V T
Sbjct: 394 RLTVRVLPAEDTVKDIPHLPTVTKLRLDVNT 424


>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
            6069207-6069291,6069421-6069580,6069667-6069743,
            6069848-6069898,6069979-6070069,6070167-6070468,
            6070549-6070830,6070911-6071388,6071457-6071560,
            6071647-6071809,6071895-6072017,6072099-6072217,
            6072304-6072636,6072713-6073003,6073088-6073171,
            6073260-6073393,6073478-6073705,6073795-6073966,
            6074062-6074316,6074408-6074668
          Length = 1444

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 138  FFQLETFSQW-FYTLLTCAV--ESNYALYVSSSLICIWCLVSGYSV 266
            FF   TF  + FY ++  A+   S+ A  VS++  CIW + +G+ +
Sbjct: 1310 FFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLI 1355


>06_03_0947 +
           26248378-26248494,26248600-26248764,26248843-26248952,
           26249065-26249179,26249310-26249408,26249485-26249694,
           26249802-26250965
          Length = 659

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
 Frame = +3

Query: 534 WLRIVVSYLGALYKRNPEPMRMFLSLSIVKVVMQIIYFGY----QPHFFDIFGN----ET 689
           W   + +   ALY         F  L I KVV  ++YFGY       FF + G       
Sbjct: 586 WRSYLTAGSSALYLFLYAAFYFFTKLDITKVVSGVLYFGYMLIASAAFFVLTGTIGFYAC 645

Query: 690 YWFLKLL 710
           +WF +L+
Sbjct: 646 FWFTRLI 652


>09_06_0252 +
           21867179-21867283,21868362-21868526,21868621-21868730,
           21868802-21868904,21868998-21869110,21869204-21869357,
           21869476-21870633
          Length = 635

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
 Frame = +3

Query: 534 WLRIVVSYLGALYKRNPEPMRMFLSLSIVKVVMQIIYFGY----QPHFFDIFGN----ET 689
           W   + S   ALY         F  L I K+V  I+YFGY       FF + G       
Sbjct: 562 WRSYLTSGSSALYLFLYAAFYFFTKLQITKLVSGILYFGYMLLASLAFFVLTGTIGFCAC 621

Query: 690 YWFLKLL 710
           +WF +L+
Sbjct: 622 FWFTRLI 628


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,808,134
Number of Sequences: 37544
Number of extensions: 460309
Number of successful extensions: 991
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)