Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0413
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7999| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_47472| Best HMM Match : zf-CXXC (HMM E-Value=5.9)                   28   6.7  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           28   6.7  
SB_44809| Best HMM Match : FG-GAP (HMM E-Value=1.1)                    28   8.9  
SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)                        28   8.9  

>SB_7999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 668 EEMRLVSE--INDLHHDLYYGEAEEHSHRFGISLI*CSQIGHDNPQ 537
           E +R V E  IN     +Y   +EEH+    + L+ CS + HDNPQ
Sbjct: 11  EPVRNVDEYKINQTESLVYTYNSEEHTA--DVILLPCSSVSHDNPQ 54


>SB_47472| Best HMM Match : zf-CXXC (HMM E-Value=5.9)
          Length = 433

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +3

Query: 174 TLLTCAVESNYALYVSSSLICIWCLVSGYSVSFADSC 284
           T   C V +   L  SSSL C WC   G  +  A  C
Sbjct: 180 TATRCTVHAWCRLKDSSSLYCPWCAQPGVDLQTAPRC 216



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +3

Query: 174 TLLTCAVESNYALYVSSSLICIWCLVSGYSVSFADSC 284
           T   C V +   L  SSSL C WC   G  +  A  C
Sbjct: 304 TATRCTVHAWCRLKDSSSLYCPWCAQPGVDLQTAPRC 340


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 24/109 (22%), Positives = 44/109 (40%)
 Frame = -3

Query: 495 HVENTGIASGLCDNRCVLNIHIVLTPKCPREWVEAVGSEV*NQE*RLHNRPGYSAELIVI 316
           H+E   +  G C  +   N+H++ + KC  EW + V   +        +    S E +++
Sbjct: 455 HLERKPVKCGRC-TKWYRNVHLLKSHKCAPEWYQPVPQALVT---LAASSTDSSPERVLL 510

Query: 315 NVALEAISDNSNCQQMKRYIQTQDTKCR*AMTKHIVRNLIPQHMLVTCR 169
            +  E +S           I    TK + A T    + L  QH+L+  +
Sbjct: 511 QLTPEVVSKLKEASD----IVLSQTKEKSAATTSQTKTLNEQHVLLAIK 555


>SB_44809| Best HMM Match : FG-GAP (HMM E-Value=1.1)
          Length = 350

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +1

Query: 361 LLLVLNLGTHGFYPFPGTFRRQYNMYVEYTSIIAEPRCYPGILHVYLVDTSIFSL 525
           LL   N G HGF    GT    Y+MY      +     YPG     L+ T+ FSL
Sbjct: 41  LLQRSNFGNHGFAKILGT----YSMYTTGPEFLPSTALYPG----SLISTTDFSL 87


>SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 719  EYVKEFQEPVSFITEYIEEMRLVSEI 642
            EYV +F+  VS +TEY+ +  ++  I
Sbjct: 1030 EYVPDFEIIVSIVTEYVPDFEIIMSI 1055


>SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 598

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 199 DSTAHVSNV*NHCENVSN*KNCTQFTTHTHNNSFIVDCIYKSKHT 65
           DST   +    HC+ +S    CT    HT N   +V C  K+KHT
Sbjct: 68  DSTEAYTQGETHCDFLSV-VFCTLKAKHTCNFVSVVYCTLKTKHT 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,916,473
Number of Sequences: 59808
Number of extensions: 562942
Number of successful extensions: 1156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)