Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0413
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z47358-10|CAA87438.1|  507|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z47356-9|CAA87420.1|  507|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical ...    28   7.9  
AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical
           protein C34F6.11 protein.
          Length = 215

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 63  FVCFDLYIQSTIKLLLWVCVVNCVQFFQLETFSQWFYTLLTCAVESNYALYVS-SSLICI 239
           F C+ +YI     LL +V  V C   F L  +   FYT + C  E+   +++  ++LI  
Sbjct: 59  FFCYSVYINFIFALLAFVGGVLC---FTLGLYYSTFYTRINC--ENGINIWIPLNNLIAT 113

Query: 240 W 242
           W
Sbjct: 114 W 114


>Z47358-10|CAA87438.1|  507|Caenorhabditis elegans Hypothetical
           protein ZK1307.8 protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 656 LVSEINDLHHDLYYGEAEEHSHRFGISLI*CSQIGH-DNPQP-NQINEKI 513
           L S++ND + D   G  E  +   G +   CS +GH  N  P N++N+K+
Sbjct: 56  LYSQLNDDYCDCKDGSDEPGTSACGNAFFYCSNVGHKGNFIPTNRVNDKL 105


>Z47356-9|CAA87420.1|  507|Caenorhabditis elegans Hypothetical
           protein ZK1307.8 protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 656 LVSEINDLHHDLYYGEAEEHSHRFGISLI*CSQIGH-DNPQP-NQINEKI 513
           L S++ND + D   G  E  +   G +   CS +GH  N  P N++N+K+
Sbjct: 56  LYSQLNDDYCDCKDGSDEPGTSACGNAFFYCSNVGHKGNFIPTNRVNDKL 105


>AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical
           protein F56C11.6b protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 719 EYVKEFQEPVSFITEY---IEEMRLVSEINDLHHDLYYGEAEEH-SHRFGI 579
           ++ K   + V FI +Y       RL + + DL HD+Y+ + + H S  FG+
Sbjct: 271 DHEKNMHQIVKFIGDYSINYGTYRLANIMTDLQHDVYFYQFDYHNSAGFGV 321


>AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical
           protein F56C11.6a protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 719 EYVKEFQEPVSFITEY---IEEMRLVSEINDLHHDLYYGEAEEH-SHRFGI 579
           ++ K   + V FI +Y       RL + + DL HD+Y+ + + H S  FG+
Sbjct: 388 DHEKNMHQIVKFIGDYSINYGTYRLANIMTDLQHDVYFYQFDYHNSAGFGV 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,482,089
Number of Sequences: 27780
Number of extensions: 427640
Number of successful extensions: 1103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)