Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0413
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.0  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 213 IVRNLIPQHMLVTC-RTIVRTFPIERTARNSPHTPTIIVLLLIVY 82
           I+RN++P++++  C +    T+  +  A  +    T I    +VY
Sbjct: 190 IIRNMVPENLVQACFQQAQTTYVTKEVATGTASEITQIQEATLVY 234


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 83  YTINNKTIIVGVCGELRAVLSIGNVLTMV 169
           YT+    +I  V G +     IGN+L  V
Sbjct: 36  YTVTQAILIALVLGSIIVGTVIGNILVCV 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,085
Number of Sequences: 438
Number of extensions: 5769
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)