Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0413
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09310.1 68418.m01079 expressed protein                             29   4.2  
At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to...    28   5.5  
At2g07690.1 68415.m00993 minichromosome maintenance family prote...    28   7.3  
At3g47250.3 68416.m05132 expressed protein contains Pfam profile...    27   9.6  
At3g47250.2 68416.m05131 expressed protein contains Pfam profile...    27   9.6  
At3g47250.1 68416.m05130 expressed protein contains Pfam profile...    27   9.6  
At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein conta...    27   9.6  

>At5g09310.1 68418.m01079 expressed protein
          Length = 146

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 102 LLLWVCVVNCVQFFQLETFSQWFYTLLTCAVESNYALYVSSSLICIWCL 248
           LL W+  VNC  F+ +   S+ F  +    V S     V ++L+  W L
Sbjct: 66  LLPWLWFVNCFYFWPVLRHSRAFPQIRNYVVRSAIGFSVFTALLSAWAL 114


>At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to
           Zinc finger protein constans-like 15 (SP:Q9FHH8)
           {Arabidopsis thaliana}
          Length = 386

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -2

Query: 283 QLSANETLYPDTRHQMQISDDETYSA*FDSTAHVSNV*NHCENVSN*KNCTQFTTHTHNN 104
           QLS +E   P T       D + +   F+ T+ V++  N C  V N  N   F   +++ 
Sbjct: 11  QLSMDEITSPLTAQIFDFCDSQLFQETFNQTSEVTSASNGCGYVEN-NNTNNFPDKSNSG 69

Query: 103 S 101
           S
Sbjct: 70  S 70


>At2g07690.1 68415.m00993 minichromosome maintenance family protein
           / MCM family protein similar to SP|P55862 DNA
           replication licensing factor MCM5 (CDC46 homolog)
           {Xenopus laevis}; contains Pfam profile PF00493:
           MCM2/3/5 family
          Length = 727

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 27/98 (27%), Positives = 41/98 (41%)
 Frame = -3

Query: 294 SDNSNCQQMKRYIQTQDTKCR*AMTKHIVRNLIPQHMLVTCRTIVRTFPIERTARNSPHT 115
           +D+     +KRYIQ    +C   ++K    NL  Q   VT R  ++    E T   +P  
Sbjct: 546 TDSKEDNWLKRYIQYCRARCHPRLSKDAAENL--QRKYVTIRMDMKRRAHE-TGEAAPIP 602

Query: 114 PTIIVLLLIVYTNRSTQKFN*PNYLFS*IFNRKFALFD 1
            T+  L  IV  + S  K    +       ++ F LFD
Sbjct: 603 ITVRQLEAIVRLSESLAKMRLSHEATPDDVDKAFKLFD 640


>At3g47250.3 68416.m05132 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 480

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 244 VLCLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW--AVVEPLLLVL 375
           ++ LD  F L+ + IV+     D+N D    IPW  A ++  LL+L
Sbjct: 152 MMILDGCFILMLLLIVSRKIDLDMNKDPIFTIPWILASIQSDLLLL 197


>At3g47250.2 68416.m05131 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 480

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 244 VLCLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW--AVVEPLLLVL 375
           ++ LD  F L+ + IV+     D+N D    IPW  A ++  LL+L
Sbjct: 152 MMILDGCFILMLLLIVSRKIDLDMNKDPIFTIPWILASIQSDLLLL 197


>At3g47250.1 68416.m05130 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 480

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 244 VLCLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW--AVVEPLLLVL 375
           ++ LD  F L+ + IV+     D+N D    IPW  A ++  LL+L
Sbjct: 152 MMILDGCFILMLLLIVSRKIDLDMNKDPIFTIPWILASIQSDLLLL 197


>At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein contains
           Pfam profile PF01151: GNS1/SUR4 family
          Length = 281

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +3

Query: 63  FVCFDLYIQSTIKLLLWVCVVNCVQFFQLETFSQWFYTLLTCAVESNYALYVSSSLICIW 242
           F+CF +  +++ ++  W       +F  L    + F++++     S + L   SSL+CI 
Sbjct: 113 FLCFPVGTRASGRVFFWSYAFYLSRFLHL---FRTFFSVIRRRKLSFFQLINQSSLLCIS 169

Query: 243 CLVSGYSVSF 272
            L   YS SF
Sbjct: 170 FLWLEYSQSF 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,085,858
Number of Sequences: 28952
Number of extensions: 380711
Number of successful extensions: 908
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)