Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0412
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    28   1.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.3  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   3.9  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    25   9.1  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   9.1  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 420 ERHRRLQFCRLQEPTTYYTWTHRGCIYR 503
           ER++ LQ C + E T +Y W    C+ R
Sbjct: 13  ERNKLLQICNMDEQTMFYKW-ESWCLQR 39


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 449 PSRTHNILYLDTQRMHLPKPKSLLHYVGAHHSNS 550
           PS    IL +  ++ H P P+ L  YVG   S S
Sbjct: 793 PSTVSTILQIPDKKFHRPFPRHLHRYVGRSASES 826


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 154 DFIMGASYVYNRDRMASPELYLTYCRTIQFSHYFFFIILVLIYSVVSA 11
           D+I+GA     + ++    LYLT         Y ++I++  IYS+  A
Sbjct: 545 DYILGAGLCKAQPKILLSLLYLTDLSLFFLDTYLWYILISTIYSLAYA 592


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 543 PTPEDREHGAVEERFSSLCYAGHMPG-YTMGYNENGMVFSINTLS 674
           P P+   H +V E ++ L Y  H+P    +   + G+ F   TL+
Sbjct: 110 PNPQTISHESVNEEYTELPYDAHLPSEQKVPDRKWGLTFGFLTLA 154


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 18/81 (22%), Positives = 34/81 (41%)
 Frame = +2

Query: 35  N*DNKKEIMRELNGTAVCEIQLGRRHAVPVIYVRGSHYEVGFDVGRTFSSIIKSFISNYA 214
           N  NK+E++  L      EI++G+ + + +   R    +  F         ++S  S   
Sbjct: 27  NVKNKEELLSTLTYFINYEIEMGQTYPIDIKMTRNEAEDFFFKFCTVICVPVESETSPAP 86

Query: 215 NLRDFEREYKTDTAGMRTIRP 277
           +L     ++KT   G   I+P
Sbjct: 87  DLATASIDWKTSLLGAFYIKP 107


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 19/84 (22%), Positives = 36/84 (42%)
 Frame = +2

Query: 119 PVIYVRGSHYEVGFDVGRTFSSIIKSFISNYANLRDFEREYKTDTAGMRTIRPWLTWRSD 298
           P  YV  ++  V F   +    +  SFIS+  ++ D+E    T  A     +    +   
Sbjct: 54  PEKYVSDANAIVSFLYWKQEEDLFNSFISSKLSILDWEALQFTPKAYTAKTKEDFAYLLS 113

Query: 299 SLTTLRRSGVLLMELTFLSISYSS 370
            L T+ +   +L E T + ++ +S
Sbjct: 114 QLETIFKENEILNEFTPVEVALAS 137


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 147 MKSASMWVAHSPPSSRASYQITLIYVTLSANTKLI 251
           +KS +MW + + PS   S   T+   T SAN  ++
Sbjct: 74  LKSGNMWDSLNAPSELTSKNPTVSSTTSSANPAIV 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,484,899
Number of Sequences: 5004
Number of extensions: 77661
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)