Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0412
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0104 - 816185-816602,816710-816817,816910-817037                 33   0.25 
11_01_0104 - 781471-781888,781994-782101,782195-782511                 33   0.25 
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65...    29   4.1  
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    29   5.4  
05_03_0170 - 9132207-9133010,9133232-9133894                           28   9.5  
02_01_0519 - 3748415-3748432,3749010-3749041,3749474-3749606,374...    28   9.5  

>12_01_0104 - 816185-816602,816710-816817,816910-817037
          Length = 217

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 543 PTPEDREHGAVEERFSSLCYAGHMPGYTMGYN-ENGMVFSINTLSPL 680
           PT E   H   +ERF +LC   +MP Y + +  E    F +N  SPL
Sbjct: 151 PTLEHEAHEVQDERFENLCMVQNMPEYLIDFELERAFEFIVN--SPL 195


>11_01_0104 - 781471-781888,781994-782101,782195-782511
          Length = 280

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 543 PTPEDREHGAVEERFSSLCYAGHMPGYTMGYN-ENGMVFSINTLSPL 680
           PT E   H   +ERF +LC   +MP Y + +  E    F +N  SPL
Sbjct: 214 PTLEHEAHEVQDERFENLCMVQNMPEYLIDFELERAFEFIVN--SPL 258


>08_01_0090 -
           649631-651162,653189-655019,655313-655365,655731-655735,
           656209-656411,656837-657292,657718-657805,657917-658017,
           658404-658631,659128-659445,659528-659812,660148-660711
          Length = 1887

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 348 SFLSAIPPANG*LDWNHQRQPRPTERHRRLQFCRLQEPT 464
           S L+A  P++   +W HQ Q RP+  HR+      +EPT
Sbjct: 642 SQLAAAEPSDR-PEWTHQFQERPSSSHRKDDGAANKEPT 679


>01_06_0946 + 33220910-33222221,33223373-33223734,33223863-33224073,
            33224174-33224411,33224492-33224642,33224733-33224997,
            33231775-33231820,33232167-33232815,33232883-33233384,
            33235023-33235360,33235466-33235676,33235769-33235992,
            33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +2

Query: 545  NSRRQGARGS-RGTVL--VFMLRWSHARVH-HGLQ*KRNGVFHQHAQPTSAKAWKHSSHI 712
            NSRR  A G   G VL  V +L+   A +H HGL   R  V  +     + ++W  +S+ 
Sbjct: 1036 NSRRIYASGPWNGEVLTGVPLLKSQQAGIHLHGLVEPRRDVLQRSWSDNNGQSWSENSYF 1095

Query: 713  Y 715
            Y
Sbjct: 1096 Y 1096


>05_03_0170 - 9132207-9133010,9133232-9133894
          Length = 488

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 536 HHSNSRRQGARGSRGTVLVFMLRWSHARVHHGLQ*KRNGVFHQHAQ 673
           H    RR+G RG  GTV      W  AR+ HG   +R+G     A+
Sbjct: 26  HRQAPRRRGRRGGGGTV----KSWVRARMEHGR--RRDGAAPSRAE 65


>02_01_0519 -
           3748415-3748432,3749010-3749041,3749474-3749606,
           3749702-3749765,3749948-3750010,3750101-3750243,
           3750358-3750495,3750570-3750691,3750798-3750963,
           3751058-3751180,3751325-3751396,3751484-3751591,
           3752730-3752846,3752953-3753040,3753162-3753253,
           3753378-3753490,3753994-3754127,3754209-3754564,
           3754649-3754861
          Length = 764

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +3

Query: 600 YAGHMPGYTMGY--NENGMVFSINTLSPLLL-KPG 695
           YA     Y +G+   E+GMVFS+  + PL++ KPG
Sbjct: 454 YAARNFCYDLGFMCRESGMVFSVKPVLPLVIAKPG 488


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,742,574
Number of Sequences: 37544
Number of extensions: 550558
Number of successful extensions: 1406
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)