Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0412
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45158| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_42166| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)        29   5.5  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_47668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_50716| Best HMM Match : WD40 (HMM E-Value=0)                        28   9.6  
SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)                      28   9.6  

>SB_45158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 354 ERNVSSISNTPDLLNVVRESLLHVSQGLIVRIPAVSV 244
           E NVS +S+   LLNV++  L H+  G IV+ P  S+
Sbjct: 70  EVNVSQVSDPDKLLNVLKR-LEHLINGNIVKSPTQSI 105


>SB_42166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 174 VRPTSKPTS*WEPLTYITGTAWR 106
           V+PT+KP + W P T+    +WR
Sbjct: 33  VKPTTKPVTDWPPYTHPPFASWR 55


>SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)
          Length = 687

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 500 PKPKSLLHYVGAHHSNSRRQGA-RGSRGTVLVFMLRWSHAR 619
           P  K+L   + AHHSNS  QGA    RG  ++F L  SHA+
Sbjct: 236 PYYKNLDRVMEAHHSNS--QGAYLYRRGAEMLFYLAHSHAK 274


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
 Frame = -2

Query: 357  IERNVSSISNTPDLLNVVRESLLHVS-QG-----LIVRIPAVSVLYSRSKSRRLA*FDMK 196
            +   ++  + T   +N+ RE    V+ +G     LIV +  V+++Y  S  + L  FDM 
Sbjct: 4279 VSEKLAIAAETETKINLAREEFRPVATRGSILYFLIVEMSMVNIMYQTSLRQFLGVFDMS 4338

Query: 195  LLMMEENVRPTSKPTS*WEPLTY 127
            +   E++  P  +  +  E LTY
Sbjct: 4339 MARSEKSPIPAKRIQNIIEFLTY 4361


>SB_47668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 539 DVRRHNVEVIWVSVNASSVCPSIVCCGF 456
           DV   N E +W  V+ S   PS  C GF
Sbjct: 68  DVDTKNAEGVWAKVSQSRTTPSPSCTGF 95


>SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1806

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +1

Query: 325  GVADGANV--PFYQLFLLQMDDLIGTINDNHVPRNDTGGCSSVAFKNPQHTILGHTEDAF 498
            G   G+NV   + Q    +++ + G   D  V   D G  S V     +H++ G T   +
Sbjct: 1554 GWCAGSNVGHQYVQFNFKEVNSITGITTDGQVDHPDGGNASWVTKYRVEHSMDGITWFNY 1613

Query: 499  TETQITSTLCRR 534
            TE     T C R
Sbjct: 1614 TEQGKVKTSCDR 1625


>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 494

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 215 NLRDFEREYKTDTAGMRTIRPWLTWRSDSLTTL--RRSGVLLME 340
           N+ DF+ +Y    +G RTI+ W T   + + TL   R G+  ++
Sbjct: 317 NVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHRRGIACLQ 360


>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
          Length = 895

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 7/39 (17%), Positives = 24/39 (61%)
 Frame = -1

Query: 130 VYNRDRMASPELYLTYCRTIQFSHYFFFIILVLIYSVVS 14
           +Y +  M   + Y+T CR++  + ++  ++++ I+ +++
Sbjct: 753 LYKQQMMRGVDPYVTACRSLVLNTFYTLLVIIAIFVIIT 791


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,250,147
Number of Sequences: 59808
Number of extensions: 647861
Number of successful extensions: 1801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1797
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)