Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0412
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24450.1 68417.m03505 starch excess protein-related similar t...    30   1.5  
At2g37050.1 68415.m04546 leucine-rich repeat family protein / pr...    30   2.0  
At5g27150.1 68418.m03240 sodium proton exchanger / Na+/H+ antipo...    29   4.5  
At4g30840.1 68417.m04375 WD-40 repeat protein family                   29   4.5  
At4g14160.3 68417.m02185 transport protein, putative similar to ...    29   4.5  
At4g14160.2 68417.m02186 transport protein, putative similar to ...    29   4.5  
At4g14160.1 68417.m02184 transport protein, putative similar to ...    29   4.5  

>At4g24450.1 68417.m03505 starch excess protein-related similar to
           SEX1 [Arabidopsis thaliana] GI:12044358
          Length = 1284

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 483 HRGCIYRNPNHFYIMSAH 536
           H GCIY+  NH+YI S H
Sbjct: 46  HWGCIYQGNNHWYIPSEH 63


>At2g37050.1 68415.m04546 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 934

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +1

Query: 403 DNHVPRNDTGGCSSVAFKNPQHTILGHTEDAFTETQITSTLCRRTSFQLPKTGSTGQ*RN 582
           DNH+   +T   SSV     Q+T L H      +   T  +  R  + +  T   G   N
Sbjct: 50  DNHLIYGETANISSVNETRTQYTTLRHFPADSRKYCYTLNVTSRNRYLIRATFLYGNFDN 109

Query: 583 GSRLYATL-VTCPGTPWATM 639
            + +Y    ++   T WAT+
Sbjct: 110 SNNVYPKFDISLGATHWATI 129


>At5g27150.1 68418.m03240 sodium proton exchanger / Na+/H+
           antiporter (NHX1) identical to Na+/H+ exchanger
           [Arabidopsis thaliana] gi|6650177|gb|AAF21755 and sodium
           proton exchanger Nhx1 [Arabidopsis thaliana]
           gi|4324597|gb|AAD16946; Member of The Monovalent
           Cation:Proton Antiporter (CPA1) Family, PMID:11500563
          Length = 538

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 443 LSPSRTHNILYLDTQRMHLPKPKSLLHYVGAHHSNSRRQGARGSRGTV 586
           + PS  HN+   D+ R  L +P   +HY      +S  +   G RG V
Sbjct: 473 IEPSGNHNVPRPDSIRGFLTRPTRTVHYYWRQFDDSFMRPVFGGRGFV 520


>At4g30840.1 68417.m04375 WD-40 repeat protein family
          Length = 361

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 503 KPKSLLHYVGAHHSNSRRQGARGSRGTVLVFMLRW 607
           K  +++H +  H S      A GS GTV  + LRW
Sbjct: 225 KTSAIVHSIDIHPSRKHTCIAGGSSGTVFAWDLRW 259


>At4g14160.3 68417.m02185 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 620

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +1

Query: 430 GGCSSVAFKNPQ--HTILGH-TEDAFTETQITSTLCRRTSFQLPKTGSTGQ*RNGSRLYA 600
           G CSS+  K P    T++G     A+    +  + C    F L  TGST       +LY 
Sbjct: 430 GPCSSLEKKGPNVADTVIGEGNTSAWKLCGLDKSTCLTVFFDLSSTGSTAPGALNQQLYL 489

Query: 601 TLVT 612
             +T
Sbjct: 490 QFIT 493


>At4g14160.2 68417.m02186 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 772

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +1

Query: 430 GGCSSVAFKNPQ--HTILGH-TEDAFTETQITSTLCRRTSFQLPKTGSTGQ*RNGSRLYA 600
           G CSS+  K P    T++G     A+    +  + C    F L  TGST       +LY 
Sbjct: 430 GPCSSLEKKGPNVADTVIGEGNTSAWKLCGLDKSTCLTVFFDLSSTGSTAPGALNQQLYL 489

Query: 601 TLVT 612
             +T
Sbjct: 490 QFIT 493


>At4g14160.1 68417.m02184 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 621

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +1

Query: 430 GGCSSVAFKNPQ--HTILGH-TEDAFTETQITSTLCRRTSFQLPKTGSTGQ*RNGSRLYA 600
           G CSS+  K P    T++G     A+    +  + C    F L  TGST       +LY 
Sbjct: 430 GPCSSLEKKGPNVADTVIGEGNTSAWKLCGLDKSTCLTVFFDLSSTGSTAPGALNQQLYL 489

Query: 601 TLVT 612
             +T
Sbjct: 490 QFIT 493


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,608,909
Number of Sequences: 28952
Number of extensions: 424756
Number of successful extensions: 1048
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)