Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0411
         (762 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CYF5 Cluster: Large membrane protein with signal pept...    36   1.4  
UniRef50_A1CPL4 Cluster: LysM domain protein; n=1; Aspergillus c...    33   7.7  

>UniRef50_Q5CYF5 Cluster: Large membrane protein with signal peptide
           and transmembrane domain near carboxy terminus; n=3;
           Eukaryota|Rep: Large membrane protein with signal
           peptide and transmembrane domain near carboxy terminus -
           Cryptosporidium parvum Iowa II
          Length = 2387

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -2

Query: 263 RIIIEKFNLSNYKIEYVVSTDCEDVEPDGSFFSA 162
           +II+E +N  + + E ++ST C D   DGSFF++
Sbjct: 275 KIIVENYNNHDIEAESIISTTCMDRRVDGSFFTS 308


>UniRef50_A1CPL4 Cluster: LysM domain protein; n=1; Aspergillus
           clavatus|Rep: LysM domain protein - Aspergillus clavatus
          Length = 564

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = -2

Query: 485 TCRQQIMLKYTIVVTLNNRKKSSKNEDCASSDLAGVTFV*YCYSEWLRTVAYNTMTKTES 306
           TC +QI LK+ I   L  +   S ++DC+S    GV +  +  ++W  T + NT T T S
Sbjct: 349 TC-EQISLKFAISAALFMKINPSIDQDCSSLP-PGVYYCVFPTADWNATASGNTTTTTTS 406


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,938,555
Number of Sequences: 1657284
Number of extensions: 9467588
Number of successful extensions: 17934
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17927
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)