Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0411
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)               29   4.1  
SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)                29   4.1  
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_55579| Best HMM Match : Rhodanese (HMM E-Value=9.2e-29)             28   9.5  

>SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
          Length = 194

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 431 RKKSSKNEDCASSDLAGVTFV*YCYSEWLRTVAYNTMTKTESNPTVASK 285
           R   + N  C S+  A V     CYS    TVA NT + + +  TVA+K
Sbjct: 100 RATVATNTKCYSATRATVATNTKCYSATRATVATNTKSYSATRATVATK 148


>SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
          Length = 194

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 431 RKKSSKNEDCASSDLAGVTFV*YCYSEWLRTVAYNTMTKTESNPTVASK 285
           R   + N  C S+  A V     CYS    TVA NT + + +  TVA+K
Sbjct: 100 RATVATNTKCYSATRATVATNTKCYSATRATVATNTKSYSATRATVATK 148


>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 431 RKKSSKNEDCASSDLAGVTFV*YCYSEWLRTVAYNTMTKTESNPTVAS 288
           R   + N +C ++  A V  +  CY+  L TVA NT     +  TVA+
Sbjct: 388 RATVAHNTNCYNATRATVATITNCYNATLATVATNTNCYNATRATVAT 435


>SB_55579| Best HMM Match : Rhodanese (HMM E-Value=9.2e-29)
          Length = 269

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 222 YFVIG*VKLFYNNPKNSSHQPF-ASHCW 302
           Y + G  K F+N  K +SH PF   +CW
Sbjct: 198 YLLDGGYKNFFNTCKGASHSPFRLRNCW 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,888,138
Number of Sequences: 59808
Number of extensions: 306345
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)