Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0411
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    29   2.7  
U39997-8|AAA81100.1|  718|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 568 HLMLFHFIVYVIRAITPNSRFRCYLRHLLMYFCFFNSWNKQDSDGWILI 714
           H++LF +  Y +        F C +       CFFN W+ +D   + +I
Sbjct: 140 HIVLFEYCKYTVDVPLACDNFNCVINQ-----CFFNYWSLRDQVQYFII 183


>U39997-8|AAA81100.1|  718|Caenorhabditis elegans Hypothetical
           protein F56D1.2 protein.
          Length = 718

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 746 WAGELMCKYK*IKIHPSESCLFHELKKQKYISKCLR*HRNLLL 618
           W  +   +Y      P   C F+  KK++   +CLR H NL++
Sbjct: 309 WENQKAGRYLLTAYVPIRGCKFYCEKKERGCRQCLRTHLNLVI 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,754,297
Number of Sequences: 27780
Number of extensions: 243349
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)