Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0411
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.3  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    22   5.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 194 LHNLWRPRILFCNWIS*TF 250
           LHN+WRP   F N    TF
Sbjct: 84  LHNIWRPDCFFKNAKKVTF 102


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 710 KIHPSESCLFHELKKQKYISK 648
           K+H S +C+ + LK+  Y+ K
Sbjct: 92  KLHVSHTCIENHLKQLGYVQK 112


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 607 AITPNSRFRCYLRHLL-MYFCFFNSWNKQDSDGWILIYLYL 726
           ++ P+  ++    HLL   F        +D  GW+L+ LYL
Sbjct: 102 SLVPHMAWQLSTAHLLAQLFLKSTEVTPRDGLGWLLLMLYL 142


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 608 LSHPTAGFDAILDTCLC 658
           L  P  GFDAI+   +C
Sbjct: 55  LDAPEGGFDAIMQAIVC 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,040
Number of Sequences: 438
Number of extensions: 2914
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)