Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0409
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0225 - 18413668-18413751,18414641-18415493,18417497-18417516 32 0.56
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 30 1.7
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 30 2.3
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 29 3.9
07_01_0278 + 2039873-2039896,2040342-2040407,2040842-2040903,204... 29 3.9
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 28 6.9
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224... 28 6.9
>06_03_0225 - 18413668-18413751,18414641-18415493,18417497-18417516
Length = 318
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 57 TSSVIEANVEWC*SHFVLLFITSHKSSIKRLIKWHVIIQKMVVKMK 194
TS ++ A V H L ++ + K S +RLIKW +++Q+ +++K
Sbjct: 7 TSYLVGAKVIVYTDHAALKYLLTKKDSKRRLIKWILLLQEFDIEIK 52
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = +1
Query: 247 NRRYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKE 402
++R ELL+ L+ELN + + + +++H +L E +++++ KE
Sbjct: 209 HKRNELLQQQLNELNVSKERISTNMEELHNELSEKEAKLRRLQEDLSRREKE 260
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 256 YELLESTLDELNSALDFLERKNDDIHQQLKELLQSNI--AIRQEMREENKE 402
Y+LL E A+ LER DDI L++L+Q + +R+++ EE K+
Sbjct: 906 YDLLMK--GETGLAVATLERLGDDIESDLRQLMQGTVRRLLRRQIAEEMKK 954
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 244 YNRRYELLESTLDELNSALDFLERKNDDIHQQLKEL 351
Y R+ + STL EL + LDF + + + +QL L
Sbjct: 817 YGRQAPVASSTLVELTTRLDFFKERRSQLMEQLHSL 852
>07_01_0278 +
2039873-2039896,2040342-2040407,2040842-2040903,
2042839-2043067,2043787-2044014,2044177-2044469,
2044594-2044909
Length = 405
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 259 ELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQ 378
+L + LD+L ++ L K+D++HQ L+++ + IR+
Sbjct: 114 KLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIRE 153
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 7/53 (13%)
Frame = +1
Query: 271 STLDELNSALDFLERKNDDIHQQLKELLQSN----IAIR--QEMREE-NKEVN 408
S ++EL L + N D+H QL+++ +SN +A++ EM E+ NKE++
Sbjct: 421 SQIEELKQELGHEKNLNGDLHLQLQKMQESNSELLLAVKDLDEMLEQKNKEIS 473
>01_05_0484 -
22621614-22621676,22621798-22621911,22622006-22622453,
22623052-22623179,22623747-22623821,22623954-22624040
Length = 304
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 129 KSSIKRLIKWHVIIQKMVVKMKMDLIKT*NLQKMITMKI 245
K S K+ IKW II K++ ++K LQK++T ++
Sbjct: 227 KGSKKQKIKWKKIITKVLQTNPDGVLKLKKLQKLVTKEL 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,745,920
Number of Sequences: 37544
Number of extensions: 260292
Number of successful extensions: 655
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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